Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1846 ATGGGTAGCGAAACTCTCTTCCTTCAAACCCCACCAACCCCGTCATCCACCACCACTGTGAACCTGCCTGTACCTGCTCCAGTGGCATCAGCATCAGCATCAGCAACAACTGCGCCCCCTACCTCTCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAGCTTGTTATTTACTACCTCAAGCGCAAGGTTTGTGGCAAAAGCTTCCGATTTGATGCCATATCTGAGGTTGACATATACAGAAGCGAGCCCTGGGAACTAGCAGATAAGTCAAGGTTGAAGACTAGGGACCAAGAATGGTATTTTTTCAGTGCATTGGACAAGAAATATGGTAACGGTGGCAGAATGAACAGGGCCACAGTCAAAGGATACTGGAAAGCTACTGGAAATGACCGTCCAGTTAAGCATGAACAAAAGGAGGTAGGGTTGAAGAAGACATTGGTCTTTCATAGTGGGAGAGCTCCAGATGGTGTTAGGACAAATTGGGTCATGCATGAGTACAGGCTTGTTGATTTGCCAGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGAAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGGTATGCACCCTTCATTGAAGAAGAGTGGGATGATGAATCAGGAATGGTTCCAGGGGCAGAACCTGTGAATAATGGTTGTGTTGCCTACCCTACACGTGTTGAAGGCAATGGTGGAGTTTTATGCATTGAGGGCAGAAATGATGCTGTACAGGACACTCAGTCTAACAATAAAGTTCCTTTTGATGTGAACAAGCTTCCAATAGAAACTCAAAATCTTCTGGCTGTGTGCAAGAGGGAAAGTATGGCCGAGTATCCATCACCTGAAAAGGATGACAATAATTGTAAGCAAATGGATGAGTACCCTTCACCTCAAGCAGATAATCCAAAGCCTATCCCTCAAATATACAAAAGACGGCGGCATAACTTATCAAACCACTCAATCGTTTCTGGAGATTCAATTCGAACCAGCCAGGATCCGTGCTCATCTACAATAACCACTGCTGCAACCACTCTTCCAACTACCACCACTGCTGCTGCTACCACCACTACTGCACCAAAAAAACATTTTCTCTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCCCTCGAATCAAAGGAAAGCCTTGCTTCAATTCAGCCACCACCAGACTTTGATGCTGCAGATCTCGAGTCATCTGTGCCTCCAAGCTGTGCAAAGTTCATCAAACACTTGCAGAGTGAGATGCAGAAGCTTGCAGTTGAGAAAGAGACAATGAGGTTTGAGATGATGAGTGCTCAAGCAATGATTAACATTCTCCAGTCTCGCGTCGACATTCTCAGCAAAGAAAATGAAGAGTTGAAGAGGATGATCGAAAAACCTTAG 1422 0.4592 MGSETLFLQTPPTPSSTTTVNLPVPAPVASASASATTAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWELADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATVKGYWKATGNDRPVKHEQKEVGLKKTLVFHSGRAPDGVRTNWVMHEYRLVDLPERAGTGSSQPQKDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDESGMVPGAEPVNNGCVAYPTRVEGNGGVLCIEGRNDAVQDTQSNNKVPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDNNCKQMDEYPSPQADNPKPIPQIYKRRRHNLSNHSIVSGDSIRTSQDPCSSTITTAATTLPTTTTAAATTTTAPKKHFLSALVEFSLLESLESKESLASIQPPPDFDAADLESSVPPSCAKFIKHLQSEMQKLAVEKETMRFEMMSAQAMINILQSRVDILSKENEELKRMIEKP* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1846 473 Coils Coil 421 441 - -
Apr8g1846 473 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 32 468 - -
Apr8g1846 473 Coils Coil 449 469 - -
Apr8g1846 473 ProSiteProfiles NAC domain profile. 43 197 IPR003441 GO:0003677|GO:0006355
Apr8g1846 473 Pfam No apical meristem (NAM) protein 45 170 IPR003441 GO:0003677|GO:0006355
Apr8g1846 473 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g1846 473 PANTHER NAC DOMAIN-CONTAINING PROTEIN-RELATED 32 468 - -
Apr8g1846 473 MobiDBLite consensus disorder prediction 289 303 - -
Apr8g1846 473 MobiDBLite consensus disorder prediction 289 318 - -
Apr8g1846 473 Gene3D NAC domain 52 200 IPR036093 GO:0003677|GO:0006355
Apr8g1846 473 SUPERFAMILY NAC domain 35 198 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1846 Apr-Chr8 28907939 28914575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1846 21 468 NAC Transcription Factor Family AT3G10480 44.030 1.50e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr8g1846 NAM 3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1846 - - gmx:100808783 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1846 8 28907939 28914575 Apr8g1846 8 28907939 28914575 ECH