Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1843 ATGGAAGCACCAGATGAACTCTCTTTGGGTTCCAAAGACCACACCAACATTGTCAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATTCCCTTCTCCATCACTGCTAATTCTTCCACTGGAGAAGGAGAAAGAGAAGATTGTTACAATGGTGTTGATCATGATGATCACAACAACAACAACAACAACAATAACAACAGGAACAGCTCCCCCGCCACTTCTTCTGCAGGCTTACAAGACAGCACAGATGAAGAGGAGGACATGGCGAATTGCCTCATCCTCCTGGCACAAGGACAATCCCGGGAATCCCCAAAACTCGCCGAGGAAGACGGTGGCATGAACTATGCCAGGTATAGCAGTAAAAAATTCTTGGAAGCTGCTACCTTGGGGTCTAGCAGGGCAGGGTATTATGTTTATGAATGCAAGACATGTAACAGAACTTTCCCTTCATTTCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAAGCCTAAGGCAATGGCAATGGCAATTGGGCAAGACAAAAAACAAGTCTTTTTGTCTTCAGATGAAGAAGAGTTTCAATTGAAGACCAATAAATCATCACTTTCCTTTCAATTGAATGGCAGGGGAAATTTGTACAGCAATAACAACAAGTCAAAGGTTCATGAGTGCTCTATCTGTGGTGCTGAATTCACATCAGGACAAGCACTTGGTGGCCATATGAGACGCCACCGAGCACCCGTGGGAACCAACACCGCACTTTCTTTGACCCCAATGGCTTTGGAACCAGAAGAAGATCATCCCAGAAAGAAAAGGAATGTGTTGAATTTGGATTTGGATCTCAACCTTCCTGCCCCTGAAGATGATCAAAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACAACAACAACAACAGCATGGAAATAAACAACAACAACAACAAACAAGTCTTGTCTTCCCCGCCCCAGCTTTGGTGGATTGTCATTACTGA 990 0.4475 MEAPDELSLGSKDHTNIVKGKRTKRVRPQSPIPFSITANSSTGEGEREDCYNGVDHDDHNNNNNNNNNRNSSPATSSAGLQDSTDEEEDMANCLILLAQGQSRESPKLAEEDGGMNYARYSSKKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKAMAMAIGQDKKQVFLSSDEEEFQLKTNKSSLSFQLNGRGNLYSNNNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTALSLTPMALEPEEDHPRKKRNVLNLDLDLNLPAPEDDQRESKFAFASKQQQQQQQQQHGNKQQQQQTSLVFPAPALVDCHY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1843 329 MobiDBLite consensus disorder prediction 57 81 - -
Apr8g1843 329 MobiDBLite consensus disorder prediction 292 317 - -
Apr8g1843 329 MobiDBLite consensus disorder prediction 278 317 - -
Apr8g1843 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Apr8g1843 329 SUPERFAMILY beta-beta-alpha zinc fingers 140 240 IPR036236 -
Apr8g1843 329 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 329 - -
Apr8g1843 329 MobiDBLite consensus disorder prediction 30 46 - -
Apr8g1843 329 SMART c2h2final6 141 163 IPR013087 -
Apr8g1843 329 SMART c2h2final6 218 240 IPR013087 -
Apr8g1843 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 240 IPR013087 -
Apr8g1843 329 MobiDBLite consensus disorder prediction 1 85 - -
Apr8g1843 329 PANTHER ZINC FINGER PROTEIN ZAT5 11 329 - -
Apr8g1843 329 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Apr8g1843 329 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Apr8g1843 329 Gene3D Classic Zinc Finger 139 240 - -
Apr8g1843 329 Pfam C2H2-type zinc finger 140 166 - -
Apr8g1843 329 Pfam C2H2-type zinc finger 217 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1843 Apr-Chr8 28871441 28872430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1843 1 329 C2H2 Transcription Factor Family AT5G04390 46.361 8.90e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1843 zf-C2H2_6 6.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1843 - - gmx:100799383 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0236 4 1994679 1995515 Apr8g1843 8 28871441 28872430 ECH
Apr8g0541 8 4786773 4787642 Apr8g1843 8 28871441 28872430 ECH
Apr2g2160 2 26727490 26728902 Apr8g1843 8 28871441 28872430 ECH
Apr3g1310 3 27559012 27560326 Apr8g1843 8 28871441 28872430 ECH
Apr8g1843 8 28871441 28872430 Apr8g1843 8 28871441 28872430 ECH