Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1838 ATGTTTTCTAGATTGATACATCCCCATGAAGGACAGGAAGACATGCAGGGTGCTCACACTCACACTCACTTGGGAGACCCTTGTCTTGTTTTGACTTCTGATCCCAAACCTCGCCTTCGTTGGACTGCTGACCTTCATGAACGCTTTGTTGATGCTGTCACTCAACTTGGGGGTGCCACTAAAGCCACTCCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAGGATTCTGACGAGGGATGCAAAGATGGAATATCAGCTTCATATCTTCAAGAAAGCCCTGGCACGGGTAACTCGTCTCCAAAGCTACCAGCTTCTGATGCAAACGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTTCATTTACTGGTGGAGAATTCTGTATTGCAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCCGAGCGGAGGTATATGGTCATGCTTGAGAGAGCATGTAAAATGTTGGCTGATCAATTTATCGGGGATACAATTATTGACTCAGACAGCCAAAAATTTCAAGGACTAGAAAGCAAAGCATCAAGAAGTTCTTTAGTTGATCCCCTTGGCTTTTTCCCCCCACAATGCACCGAGGTAGGTGGAATGCATGTTTCAGAAGTACAGCCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACAGAAAGTTGCCTTACATCACTTGAGAGTCTGGGAGGGTTGACACTAGAAGGATCTCCTGGTGGCTCAAAGAAGAGGATGCTGAGCTTGGACACTATGGTAGCACCTTTGATCTGGAGTGAAGCAAACACAAGAACTCAAGGTATCCCTTTAGCCCAAGTTAACCCTTCAGGTATAACTAGGTATGGCATGTAG 942 0.4607 MFSRLIHPHEGQEDMQGAHTHTHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGATKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGISASYLQESPGTGNSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVENSVLQAEKHLQIRQDAERRYMVMLERACKMLADQFIGDTIIDSDSQKFQGLESKASRSSLVDPLGFFPPQCTEVGGMHVSEVQPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDTMVAPLIWSEANTRTQGIPLAQVNPSGITRYGM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1838 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Apr8g1838 313 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Apr8g1838 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 313 IPR044848 GO:0003700
Apr8g1838 313 MobiDBLite consensus disorder prediction 110 126 - -
Apr8g1838 313 MobiDBLite consensus disorder prediction 1 21 - -
Apr8g1838 313 Pfam MYB-CC type transfactor, LHEQLE motif 134 184 IPR025756 -
Apr8g1838 313 MobiDBLite consensus disorder prediction 91 133 - -
Apr8g1838 313 Gene3D - 35 93 - -
Apr8g1838 313 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Apr8g1838 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 313 - -
Apr8g1838 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1838 Apr-Chr8 28828354 28831790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1838 14 257 G2-like Transcription Factor Family AT3G24120 47.791 1.38e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr8g1838 Myb_CC_LHEQLE 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1838 - - gmx:100779871 527.709