Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1829 ATGAGGTATCTCTTGCTGCTTCTATGCTTTTCTACGTTGATATATGCTGCTTATGCCTTGAGCTCAGAAGGGTTGATTTTGTTCTCCCTCTTGAGGCACTGGAATGTTGTGCCTGGTGGCATAAACTCCACCTGGAAGGCCTCTGATTCCACTCCATGCTCATGGGTTGGAGTGCATTGTGATCAAGTCGACAATGTAATTTCTCTAAACCTTAGTAGTTATTCTATTTTTGGTCAATTAGGACCCGAAATTGGACATTTGATTCACTTGCAAACCTTAGACTTGTCAGGTAATGATCTCTATGGAAAAGTTCCCCCACAATTAGGTAATTGTAGCATGCTTGAGAAATTGATTCTTTCTGCGAACAACTTTAGTGGAGAAATACCTGAAAGCTTCAAAAACTTGCAAAATTTGAAGTACTTGGACATTTCTTCTAATCTTCTTAACGGGGATATTCCTGCATCCTTGTTTGAAATTACTCACCTAGAAGAAGTGTATCTTAACAACAATAGTTTAACTGGTTCCATTTCCCCAAGTGTTGGGAATATCACTGAGCTGGTCACACTTGATCTTCATAATAATCAGCTGTCAGGGACAATTCCCACATCCATTGGAAATTGTAGTAAATTAGAGAATCTGTATTTGGAAAGGAATCAATTGGAGGGAGTTATTCCTGAGAGTCTAAATAATCTCAAAAATCTCCATGATTTATACCTGAGTTATAATAATCTTGGAGGCACTATTCAGTTGGGATCTGGAAATTGCAAAAAGTTATCTTATTTGAGTCTTTCTTACAATCATTTTAGTGGGGGTATACCATCAAGCTTGGGGAATTGTAGTAGTCTAATAGAGTTTTATGCTGCAGGGAACAACTTAGTTGGCAGTATACCATCAACCTTGGGCCTATTGCACAAGCTTTCCATTCTAATAATTCCAGTGAACCTATTTTCTGGGAACATACCTCCACAGATTGGCAATTGCAAATCACTGGAAGAGTTACATTTGTATTCCAATGAACTTGAGGGAGAAATTCCTAGTGAATTGGGAAACTTGAGTACTCTACGTGATCTTAGATTGTATGAAAACTTTTTGACAGGGGAAATTCCACTGGGCATATGGAAAATTCAAAGCCTTGAACATATCCTAGTGTACAATAATAGCCTTTCAGGAGAGCTACCTATAATGATGACAGAACTCAAACATCTCAAGAATATCTCTTTGTTCAGCAACCAATTCTCTGGAGTCATACCTCAGAGTCTAGGAATCAATAGCAGTTTGGTGATGTTAGACTTCATGTACAATAATTTCACCGGTACCCTCCCACCGAATCTTTGTTTTGGAAAGCAATTAGACAAGCTGAATATGGGTGGCAATCAATTTAATGGTAGCATACCTGCTGATGTAGGAAGGTGCACAACTCTTTCAAGGGTGAGACTTGAAGAAAATAATTTTACTGGGCCTCTTCCTGATTTTGAAACTAATCCAAATGCCTATTACATGAGCATCAGCAACAACAATATCAGTGGAGCAATTCCATCAAGTTTGAGAAACTGCACAAATCTCTCTCTTTTAGATCTGTCCATGAACAGCTTGACAGGTCTTGTACCCTCGGAGTTGGGAAACCTTGTGCATCTCCAGTCTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCAAATCAGCTGTCCAAATGTACCAAACTGATCAAGTTTGATGTGGGATTCAATTTCTTAAATGGTTCATTTCCATCAAGTTTTCAGAGCTGGATAGCATTAACAACTTTAATTCTCTCAGAGAATAATTTTAGTGGGGGTATCCCAGATTTCTTGCCTGAATTTGAAAAGCTGAATGAGTTACAACTTGGTGGAAATATGTTTGGAGGAAATATTCCTACATCAGTTGGAAAATTGCTGAATTTGTTATATGGGTTAAATCTAAGTGCTAATGGGATGATAGGTGAGCTTCCTAGAGAGATTGGAAACCTGAAGAATCTGCAAACACTGGATCTATCTTGGAACAATTTAACAGGAAGTATTCAAGTTCTTGATGAGCTCAGTTCATTATCTGAATTCAACATCTCATACAATTCTTTCGAAGGTCCTGTGCCACAACAGCTGATGAAGTTACCAAATTCTTCGGTATCATTTTTGGGCGATCCTGGCCTATGTGTCAATTTTTCATTATTAAATGGGTTGAATTTCACTCAAAGCAGCTATTTAAGGCCATGTGAAACAAATTCAAAAAGCCTCAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCAATATTTGTTGTTCTGCTGCTGGGACTAGTTTACATATTCTTTATCAGAAATATTAAGCAGGAAGCCATAATCAAGGAGGAAGATGATTCTTCAGCACTTCTCAATAAAGTGATGAAAGCTACAGAAAACCTAAATGATAAGTATATTGTTGGCAGAGGAGCTCAAGGAGTTGTTTACAAAGCAGCAATAAGTCCAGACAAAATTTTGGCTGTAAAGAAGCTTGTAGTTTCTCAAAATGAGGGGAAAAGCCCAGGTATGATCACAGAAATTCAAACCCTTGGGAAGATAAGGCATAGAAATTTGGTCAAAATGGAAGGGTGCTGGTTGAGAGAAAACTATGGTCTAATTGCTTACAGATACATGCCAAATGGGAGCCTTCATGATGCTTTGCATGAGAAGAATCCACCACAATCTTTGGAATGGCATGTCAGGAATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTTCATTATGATTGTGATCCTGTTATAGTGCATAGAGACATCAAGACAAGCAATATACTTCTAGATTCTGAGATGGAGCCTCACATTGCAGACTTTGGTGTTGCCAAGCTTTTGGATCAGCCTTCTACATCAAAACAGTCAATATATGTCATTGGTACAATTGGTTATATTGCACCAGAGAGTGCTTATACAACAACAAAGCGTAAGGAGTCTGATGTATACAGTTATGGGGTAGTTTTGTTGGAGCTGATATCAAGAAAGAAAGCATTGGATCCATCATTTATGGAAGGAACGGATATAGTTAATTGGATAAGATCTGTATGGGAGGAAACAGGAGTTGTTGATGAAATTGTTGATTCAGAGCTTGCTCATGAAATTTCAGACTGTAATGTGATGAAACAAGTTACCAAGGTGCTTTTGGTGGCTTTGAGATGTACAGAAAAGGATCCATGCAACAGACCCACGATGAGAGATGTTGTCAAACATTTGTAG 3255 0.3831 MRYLLLLLCFSTLIYAAYALSSEGLILFSLLRHWNVVPGGINSTWKASDSTPCSWVGVHCDQVDNVISLNLSSYSIFGQLGPEIGHLIHLQTLDLSGNDLYGKVPPQLGNCSMLEKLILSANNFSGEIPESFKNLQNLKYLDISSNLLNGDIPASLFEITHLEEVYLNNNSLTGSISPSVGNITELVTLDLHNNQLSGTIPTSIGNCSKLENLYLERNQLEGVIPESLNNLKNLHDLYLSYNNLGGTIQLGSGNCKKLSYLSLSYNHFSGGIPSSLGNCSSLIEFYAAGNNLVGSIPSTLGLLHKLSILIIPVNLFSGNIPPQIGNCKSLEELHLYSNELEGEIPSELGNLSTLRDLRLYENFLTGEIPLGIWKIQSLEHILVYNNSLSGELPIMMTELKHLKNISLFSNQFSGVIPQSLGINSSLVMLDFMYNNFTGTLPPNLCFGKQLDKLNMGGNQFNGSIPADVGRCTTLSRVRLEENNFTGPLPDFETNPNAYYMSISNNNISGAIPSSLRNCTNLSLLDLSMNSLTGLVPSELGNLVHLQSLDLSHNNLEGPLPNQLSKCTKLIKFDVGFNFLNGSFPSSFQSWIALTTLILSENNFSGGIPDFLPEFEKLNELQLGGNMFGGNIPTSVGKLLNLLYGLNLSANGMIGELPREIGNLKNLQTLDLSWNNLTGSIQVLDELSSLSEFNISYNSFEGPVPQQLMKLPNSSVSFLGDPGLCVNFSLLNGLNFTQSSYLRPCETNSKSLSKVAIVMIALGSSIFVVLLLGLVYIFFIRNIKQEAIIKEEDDSSALLNKVMKATENLNDKYIVGRGAQGVVYKAAISPDKILAVKKLVVSQNEGKSPGMITEIQTLGKIRHRNLVKMEGCWLRENYGLIAYRYMPNGSLHDALHEKNPPQSLEWHVRNKIAVGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSEMEPHIADFGVAKLLDQPSTSKQSIYVIGTIGYIAPESAYTTTKRKESDVYSYGVVLLELISRKKALDPSFMEGTDIVNWIRSVWEETGVVDEIVDSELAHEISDCNVMKQVTKVLLVALRCTEKDPCNRPTMRDVVKHL* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1829 1084 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
Apr8g1829 1084 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Apr8g1829 1084 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Apr8g1829 1084 SMART LRR_sd22_2 183 209 - -
Apr8g1829 1084 SMART LRR_sd22_2 327 353 - -
Apr8g1829 1084 SMART LRR_sd22_2 135 161 - -
Apr8g1829 1084 SMART LRR_sd22_2 231 263 - -
Apr8g1829 1084 SMART LRR_sd22_2 663 688 - -
Apr8g1829 1084 SMART LRR_sd22_2 542 574 - -
Apr8g1829 1084 Pfam Leucine Rich Repeat 665 678 IPR001611 GO:0005515
Apr8g1829 1084 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 640 - -
Apr8g1829 1084 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 683 1083 - -
Apr8g1829 1084 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 644 680 - -
Apr8g1829 1084 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Apr8g1829 1084 Gene3D Ribonuclease Inhibitor 396 494 IPR032675 -
Apr8g1829 1084 Gene3D Phosphorylase Kinase; domain 1 778 884 - -
Apr8g1829 1084 Gene3D Transferase(Phosphotransferase) domain 1 885 1084 - -
Apr8g1829 1084 Pfam Protein kinase domain 811 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1829 1084 Gene3D Ribonuclease Inhibitor 170 290 IPR032675 -
Apr8g1829 1084 Gene3D Ribonuclease Inhibitor 20 169 IPR032675 -
Apr8g1829 1084 SUPERFAMILY L domain-like 464 724 - -
Apr8g1829 1084 SUPERFAMILY L domain-like 32 197 - -
Apr8g1829 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Apr8g1829 1084 Gene3D Ribonuclease Inhibitor 291 395 IPR032675 -
Apr8g1829 1084 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Apr8g1829 1084 SMART serkin_6 808 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1829 1084 SUPERFAMILY Protein kinase-like (PK-like) 799 1084 IPR011009 -
Apr8g1829 1084 SUPERFAMILY RNI-like 151 488 - -
Apr8g1829 1084 Gene3D Ribonuclease Inhibitor 495 748 IPR032675 -
Apr8g1829 1084 ProSiteProfiles Protein kinase domain profile. 808 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1829 1084 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 644 680 - -
Apr8g1829 1084 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 640 - -
Apr8g1829 1084 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 683 1083 - -
Apr8g1829 1084 SMART LRR_typ_2 135 159 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 327 351 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 87 111 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 231 255 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 663 690 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 208 230 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 542 566 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 183 207 IPR003591 -
Apr8g1829 1084 SMART LRR_typ_2 518 541 IPR003591 -
Apr8g1829 1084 PRINTS Leucine-rich repeat signature 521 534 - -
Apr8g1829 1084 PRINTS Leucine-rich repeat signature 542 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1829 Apr-Chr8 28722943 28726785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1829 11 1084 Receptor kinase-like Gene Family AT1G73080 50.458 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr8g1829 Pkinase 8.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1829 - - gmx:100802056 1727.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1829 8 28722943 28726785 Apr8g1829 8 28722943 28726785 ECH