Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1827 ATGAACAGAACTTCCAATTCTGATGACCCTTCAGATGCCTCAAACGCATATGCATATTTCTCCATTGGATTGTCTCTTGGCTTCCTCCTCCTGATGATGTTCATAGTTCTCACTACATACTATTGTAGCCAAAGAAATCTTCGAAACAGCCAATCTAGAGCCAGAGCCACTGCTAGCAGTTTCAGCAGTTCTCATAGGACAGTGGTCATGGATAGTGATCATAGAGCTATCACTATACAAGTTGGTGAGGAAGAACTTGATGCCATCCTCAACAATTACCCCATGTTGTTGTTCTCTCAAGCCAAGCTTCATAAGCCTGATTCAACACCACTAGGCTGCTCAATATGCTTAGCAGATTACAAGGATTCGGAGTGGTTGCGCCTCTTACCCGATTGTGGTCATTTTTTTCACAAGGAATGCATTGACATGTGGTTGAGGCTTAACCTCACATGTCCGATGTGTCGAAATTCACCATTCCAAACTCCTCTTCCAACTCCCCTTGCTGAAGTTACTCCCCTGGCAACAAGACGTGATTGA 537 0.4413 MNRTSNSDDPSDASNAYAYFSIGLSLGFLLLMMFIVLTTYYCSQRNLRNSQSRARATASSFSSSHRTVVMDSDHRAITIQVGEEELDAILNNYPMLLFSQAKLHKPDSTPLGCSICLADYKDSEWLRLLPDCGHFFHKECIDMWLRLNLTCPMCRNSPFQTPLPTPLAEVTPLATRRD* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1827 178 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 172 - -
Apr8g1827 178 SMART ring_2 113 154 IPR001841 -
Apr8g1827 178 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Apr8g1827 178 Pfam Ring finger domain 113 155 IPR001841 -
Apr8g1827 178 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 172 IPR045899 -
Apr8g1827 178 CDD RING-H2_PA-TM-RING 113 155 - -
Apr8g1827 178 SUPERFAMILY RING/U-box 90 160 - -
Apr8g1827 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1827 Apr-Chr8 28701183 28701976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1827 11 176 C3H Transcription Factor Family AT5G06490 37.430 5.97e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1827 - - adu:107466513 197.208