Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1826 ATGAATAGTAGCACCAACAACGACGACGGTGGTTTTGACACAAATGGCTTCACATATGGCTTAGTATTTGTAATTGGGTTGATCTTCTTGCTTCTCTCTGTAGCTTTTGCATGCTTTCGCCTTCGCATGTCTCGTGGCCCAAATATGCTAAATATTTTGGCTGGTTTTGCACCATCTCATGGAGAAAATCGAGACCCAGTTGGGATCATGGATCGAGGCCTTCATCAATATCACATTGATACTAGTTTTGAAAGCTACCCAAAGTTACTTTTCTCTCAGATAGAGAAAAATAAAGGGGGTTCAAACAATATGATTTCTTCTAGCTGCTCCATCTGCTTAGGGGACTACAAAGAAAGTGACATGTTGAGGTTACTTCCAGATTGTGGCCATCTTTTCCACCTTGATTGTGTTGATCCATGGCTTATGTTGCATTCAACTTGTCCCATATGTAGAAAATCTTCTGTTCAAGCTTCAAATAGTGCCTCCAATTAA 492 0.4045 MNSSTNNDDGGFDTNGFTYGLVFVIGLIFLLLSVAFACFRLRMSRGPNMLNILAGFAPSHGENRDPVGIMDRGLHQYHIDTSFESYPKLLFSQIEKNKGGSNNMISSSCSICLGDYKESDMLRLLPDCGHLFHLDCVDPWLMLHSTCPICRKSSVQASNSASN* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1826 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 157 IPR013083 -
Apr8g1826 163 Pfam Ring finger domain 108 151 IPR001841 -
Apr8g1826 163 SUPERFAMILY RING/U-box 93 155 - -
Apr8g1826 163 SMART ring_2 109 150 IPR001841 -
Apr8g1826 163 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Apr8g1826 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 IPR045899 -
Apr8g1826 163 CDD RING-H2_PA-TM-RING 109 151 - -
Apr8g1826 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1826 Apr-Chr8 28698045 28698536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1826 5 157 C3H Transcription Factor Family AT5G06490 34.884 9.44e-24 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1826 - - gmx:102663718 209.149