Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1825 ATGAATAATTCAGAAGAGTCTTTGTTGTTGCTTCTAAGCTTCATCATTCTAACCCTTATTGTTACATTTGCAGCTTACATGTGCTCTATGGTTGTTAATATTCCGCCAATTTCTTCTTCCACTGCTCCATCTATGCCTATTGGTGACACACACACTAATCACACCACAATCACTGTGGAAGCAACTGAGCCACGCTTAGATGAGACTTATGCAATCTCCAAAGGGAAAATTTGTAATAGTGGTTCTTCAAGTTGTAGTTCTTCTTGTTCCATATGTTTGATGGATTACAAAGAAACTGATTTGCTTAGAGTGATACCTGGTTGTGGTCATTTGTTTCATGCCAACTGCGTTGATCCTTGGTTGAGAATTAATTTTACTTGCCCTGTTTGTAGGAGGACAGTAGGACACCAATAA 414 0.3865 MNNSEESLLLLLSFIILTLIVTFAAYMCSMVVNIPPISSSTAPSMPIGDTHTNHTTITVEATEPRLDETYAISKGKICNSGSSSCSSSCSICLMDYKETDLLRVIPGCGHLFHANCVDPWLRINFTCPVCRRTVGHQ* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1825 137 Pfam Ring finger domain 88 131 IPR001841 -
Apr8g1825 137 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Apr8g1825 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 136 IPR013083 -
Apr8g1825 137 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 134 - -
Apr8g1825 137 SUPERFAMILY RING/U-box 88 135 - -
Apr8g1825 137 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 134 IPR045899 -
Apr8g1825 137 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1825 Apr-Chr8 28696107 28696520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1825 82 131 C3H Transcription Factor Family AT5G06490 68.000 7.59e-21 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1825 - - vun:114191385 145.206