Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1817 ATGGCAACAAGATCAAAGTTTTTGGACGATGCTAAGATAAGAGTTTCCCACACTCTCACGGCTTCTCATCATGTTCAAAGTGGGGTAAACTCACCAATAGCAGCAACTGAAAAGTTTCTTTCATGTTCACATTCTACTTCAATGAAAGAAGAGGTGCCTTTAGCCACTTTGATTAGTCACATCCCTGCAAAGTTCAATGGTCATGAAGACATCAAGAATGGGAAAGAGAAAAACCAATCCATCTCTGGATCCAATTCTATCTTCCAAGCCTCAGATACAAAACATAGCTCTATTCCTCTAAACCTTTTGGAAACTCTCCCAGCATTAACCATGTCACCTGTTTTTGATGAGCCAGCAACTTCTTTAGCTTCTTCTTCTTCTTCTGCCATACCCAAATTTCCAAACTTGACTTTGTTTTTGCAGGAACCCTCCATGCTATACTCATCATCCTCACATATCAAAGGTGGTGAAGTCATATCAACAACTTCAAACCCCTCATATCATGTGTCACAGTTTGGCCAAACCCAGCAATATCAAGCAGGTAATGATTCACACAAGAAGAGCAAGAATCTAACAAATCCACAGTCCAAGGCCTTCAGTGACAATTGGTTGAGTACCACTAGGACTCAGCCTCTGAAGTATGCTGGAAGAGGCAAGTCGTTTAAAGGTGTGAGGCAGAGACATTGGGGCAAATGGGTAGCAGAGATTAGATTACCAAGAAACAGGACAAGAGTTTGGTTAGGTACCTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTTAGAGGAGATTATGCTCAATTGAACTTTCCAGATCTAAAGCATGTAATTAAGGCCAATTCTCTTAATGGAACCACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGTGTCTTCTCATAGGAAGCCATCTGATTCTCCTGGAGGGTCAAACAGCAAGAACAGTGATGAGAATGGTAAATTGAAAAATGTAAATGGCAAGGATTCAACCATGAAGGAGTGGCAATTTGATATAGAGAACAGGGTTGGAGCTGAGGTAACTGACAGGAGCAAAAGTGCACACCATGAGATATCAGATGCGGAGGCTGTTCAGTTAAGTAGAATGCCCTCTTTAGACATGGATATTATTTGGGATGAACTTTTAGTCTCTAATTCATGA 1188 0.4133 MATRSKFLDDAKIRVSHTLTASHHVQSGVNSPIAATEKFLSCSHSTSMKEEVPLATLISHIPAKFNGHEDIKNGKEKNQSISGSNSIFQASDTKHSSIPLNLLETLPALTMSPVFDEPATSLASSSSSAIPKFPNLTLFLQEPSMLYSSSSHIKGGEVISTTSNPSYHVSQFGQTQQYQAGNDSHKKSKNLTNPQSKAFSDNWLSTTRTQPLKYAGRGKSFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGDYAQLNFPDLKHVIKANSLNGTTAALVEAKLQAISQGVSSHRKPSDSPGGSNSKNSDENGKLKNVNGKDSTMKEWQFDIENRVGAEVTDRSKSAHHEISDAEAVQLSRMPSLDMDIIWDELLVSNS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1817 395 Pfam AP2 domain 221 268 IPR001471 GO:0003700|GO:0006355
Apr8g1817 395 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Apr8g1817 395 PRINTS Ethylene responsive element binding protein signature 243 259 IPR001471 GO:0003700|GO:0006355
Apr8g1817 395 MobiDBLite consensus disorder prediction 305 336 - -
Apr8g1817 395 Gene3D AP2/ERF domain 219 278 IPR036955 GO:0003700|GO:0006355
Apr8g1817 395 MobiDBLite consensus disorder prediction 176 202 - -
Apr8g1817 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 394 - -
Apr8g1817 395 SUPERFAMILY DNA-binding domain 221 278 IPR016177 GO:0003677
Apr8g1817 395 CDD AP2 219 279 IPR001471 GO:0003700|GO:0006355
Apr8g1817 395 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 3 394 - -
Apr8g1817 395 SMART rav1_2 220 283 IPR001471 GO:0003700|GO:0006355
Apr8g1817 395 MobiDBLite consensus disorder prediction 305 329 - -
Apr8g1817 395 ProSiteProfiles AP2/ERF domain profile. 220 277 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1817 Apr-Chr8 28649704 28651094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1817 112 390 AP2-EREBP Transcription Factor Family AT4G13620 45.205 1.81e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr8g1817 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1817 - - gmx:100820013 561.992