Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1809 ATGAACGACACAAGTGTAGCCGAACAATGGAGCGACGTGCCGTTTACGATGAACGACGCTGACGACATGATCATCTACAACTCCCTCCGCGACGCCGTTTCACACGGTTGGTCTCCGTCCGATTTCACAACACCAAAACCGGTATCAAACGACGCCGCCGCGAGACCACCACGCCAAAGCAGTTTCCTCGCTCACGAGAACGACGATTCCAACGCCGTCGTTTTGCCCCCGAAGAAAAAGAAGAGCTCGGGAACATGCTACAGAGGAGTGAGGCAAAGACCATGGGGAAAGTTCGCAGCTGAGATTCGCGACCCGACTCGTAACGGCGCCAGGGCGTGGCTTGGCACTTACAAAACAGCTGAGGAAGCGGCTTTGGCTTATGATCGAGCCGCGTTTAGGCTACGCGGCTCGAAGGCTTTGCTGAACTTCCCGCACCGAGTTGGCTCCAATGAACCGGCTCCGGTGAGACTAACGGCTAAGGCTGTGAGTGGCAGCTCGCGTAAGAAGCGGAGCCAGAGTTGA 522 0.5651 MNDTSVAEQWSDVPFTMNDADDMIIYNSLRDAVSHGWSPSDFTTPKPVSNDAAARPPRQSSFLAHENDDSNAVVLPPKKKKSSGTCYRGVRQRPWGKFAAEIRDPTRNGARAWLGTYKTAEEAALAYDRAAFRLRGSKALLNFPHRVGSNEPAPVRLTAKAVSGSSRKKRSQS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1809 173 Pfam AP2 domain 85 136 IPR001471 GO:0003700|GO:0006355
Apr8g1809 173 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
Apr8g1809 173 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Apr8g1809 173 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Apr8g1809 173 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Apr8g1809 173 PRINTS Ethylene responsive element binding protein signature 126 146 IPR001471 GO:0003700|GO:0006355
Apr8g1809 173 PANTHER BNAC04G53270D PROTEIN 7 160 - -
Apr8g1809 173 MobiDBLite consensus disorder prediction 38 87 - -
Apr8g1809 173 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Apr8g1809 173 PANTHER DNA-BINDING DOMAIN 7 160 IPR044808 GO:0003700|GO:0009873
Apr8g1809 173 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1809 Apr-Chr8 28591696 28592217 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1809 6 157 AP2-EREBP Transcription Factor Family AT2G44840 53.947 1.14e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr8g1809 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1809 K09286 K13432 gmx:102664672 233.802