Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1807 ATGACAACAGCTGAAGAAACTTCAAGTTTGAAACTTTTGAGCCAACATCTCTTGGGGGATACTTCAGACCCTTTTCTTACCAGCCTCATTTCTGTGAAGCTTGAAGAAGACCCATCCTCAGAACTTGATTTGGACTCAAACTTTTCAGGCCAAAGCACCTTCTGCAATCTTCTTGAGTGCTTTGGTTTTGAAGCAGATGCAGAAGTTGAGGTTGACGGTCGCAATTCCCATGATGTCCAAAACTCCATTGCAATGAGTCCCTCAGAGGAACCCCAGAAGTCCGATTTGGCTGAGACAACAGTGTCAGGGGAAAAGGAAGCAACATGTTATGAGGGAAGGCGTTATAGAGGAGTGAGAAGAAGGCCGTGGGGCAAGTTTGCTGCAGAGATACGTGACCCAAGAAAGAAAGGGACAAGGGTGTGGCTTGGCACATTTGAGAGTGAGATTGATGCTGCTAAGGCCTATGACTGTGCTGCTTTCAGAATGAGGGGTCAGAAAGCCATATTGAATTTCCCTCTGGAGGCTGGAGAGTCTCATCCTGAGCCCAGTAGTTGTGGTAGGAAAAGAAGAAGAGATCACACAAAAGATGGCTCAAGTTCTAGTTATGTCATGTCATGA 618 0.4612 MTTAEETSSLKLLSQHLLGDTSDPFLTSLISVKLEEDPSSELDLDSNFSGQSTFCNLLECFGFEADAEVEVDGRNSHDVQNSIAMSPSEEPQKSDLAETTVSGEKEATCYEGRRYRGVRRRPWGKFAAEIRDPRKKGTRVWLGTFESEIDAAKAYDCAAFRMRGQKAILNFPLEAGESHPEPSSCGRKRRRDHTKDGSSSSYVMS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1807 205 MobiDBLite consensus disorder prediction 172 205 - -
Apr8g1807 205 MobiDBLite consensus disorder prediction 181 197 - -
Apr8g1807 205 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 196 - -
Apr8g1807 205 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 MobiDBLite consensus disorder prediction 84 98 - -
Apr8g1807 205 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 MobiDBLite consensus disorder prediction 84 103 - -
Apr8g1807 205 CDD AP2 122 172 IPR001471 GO:0003700|GO:0006355
Apr8g1807 205 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Apr8g1807 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 196 - -
Apr8g1807 205 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1807 Apr-Chr8 28579505 28581655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1807 111 191 AP2-EREBP Transcription Factor Family AT5G07580 71.605 5.02e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr8g1807 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1807 - - gmx:100499732 268.855