Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1803 ATGGCAGGGAACTTCAGATTCACAATGGACCAGAAGGATATTGTTAGGTTTTTGACTACAACTGTTGATAGTTTCATTCAAGATCGGTTAATCAACAAAGAACAAAGAATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCAGAAGATGGAAGTTATGACAAAGACACTGAGGTGGAATACTCTGATCAGGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCTCTTGAAGAAGCTATCAACACCTATAACATGGAAACTAAGCTTGCTAGACTTGATTATGCCGAAAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTTCTATCTCTCAGCTTGGGCAAACCTAAATCTATCCTACTTATGGAAGTTGAGGAACAATATTCAAAATTGTGTTTTTCATGTCCTTGAGATGTTCATTGTTGACCCTTTTTTCTCTCGGATTGATTTTGCTCCTGAACTCTGGAAAGACCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCTGAAGAAAGGCATAAGCTTATGATGGAAGTGATACCTGACGCTTCTGATATGTCCTTTACAGCTGATTTTGATCAATTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCTCATCAATTAGACAAATTACAAAAGTTGGAGAAGCTTTATGGAGAATCGTTGGATGAGAACACAAAGCTATATGCAAAATATTATAAAGATTGCATGAACTCCGATGGCACCTCCAGCAAGAAAGTGGCTCCTATGTTGCCAATTGCTGAGCCACCAATGACTCCTTTACATGAGTTGAGCCGGTCTGTTCCTGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGGTTTTCTTTGACATCACGATCTAAAGATGGCGGAAATGAAACAATCAGAGAGAATTCAACTTCCAGCCATTCAAAGGCAGAGAAATCGTCCATATGGGGTACAAAGGAGATCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGCATCTGAGGATTCTGATAACAAAAGCAATATTTTTTCACCAGAGATGAAGATGGTTAAGGATGAGGAGGATATTGAACAAAAAGTGAATCTATCAAACCAGAAAAGCCAAATTAATTCTCCTTATATCTTCTCTCCCTTGGATTCTCCAAGAAATGCTCCAAATATTTCATCTTCAAAACCTGATACGCATAGTAAAAGAGAACCCAAGTGTTTGCGCTTACTATCTAGTCGTTTTAGGGACTCAACTATTGCTGAATCTTTATCATTATCTATGGACATGAGCACAGATCATATTTTCTACTCTGATAATGAAGTAATGGTCTTGAAGAATATTCAGAGAAATAACCATAACCAAACGTTAAGTATGAATCATGACAACGAGAATAGCCTGGTACTAAATGACAGCTCCCTTTGTGAAAGTGATGAGGGATATCAAAGCTGCATTTCATTGCCAAAATTGGAGAAGTTAACTATAGGGACAAAACCACCCAAAGATTTTGTTTGCCCAATCACTGGGCAGATATTTTGTGATCCTGTCACCCTTGAGACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAATGGCTCAGAACAGGAAACACAACCTGCCCGATCACGCGACAGCCTCTATCTGCAAACACATTACCAAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAACAAAATCCTGAACTAGCTCAAGAATTCTCTAATTCTAACACACCAAGGGATTGTTCTCCCTCTACAAAAGACATCCCAATGCTCTCCATTATACAAAGAACAAATGATTCACCAGGTCACAAACACAAAGATAATTATATTAGACAAAGGAGTAACAGATTTATGCGTGTTGCTGTTGCAACATCTCCAACTAGTGTGTTATCTCAAGCTGCAGTAGAAACAATAATAAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACTTGCAAGAATGTGAAAAAGCTGTATTGGAAATAGCAAGATTATGGAAGGATTCAAAGACTGATCCTCAGATTCATGCTTATTTATCAAAGCCAACTATCATAAGTGGTTTGGTGGAAATACTTTCTGCTTCTCTGAATAGAGAAGTTTTGAAAACATCAATTTATATTCTTTCCGAGCTAATATTTTTAGATGAAAGTGTTGGAGAAACACTAAATAGTGTTGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTAAAGCCAATTTTTGCCCAGCTTTCAGAACATGAACTTATACCCTCTCTTGTCCAAGTGATCCAGAACAAAAATGAGGAGTTAGATAATTTTCAATTAGTTATAGACCCCAAAGATGCTGCAATAGCAGTTATTGAGCAAATTTTAATGGGAGGGGATGAACATAGCAGGTCCTTTAATGCTTTGAGTGTCATTTCAGCAAATGGAATTCCAGCCTTAGCAAAGTATTTGGAGAAGATGGAAGGAAGGAAGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAGGCTGAAAAAGGTTGCAAGAGCTTGATAGCAAACAGAATTGAATTGTCTCCTGTTCTTGAATTATTTCACGCTGGAAATGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTAGTGCAACTGAATAGAAGGACATTTTGCAACCAGATATTACAGACAATCAAGGATGAAGGAGCATTTAGTACAATGCATACGTTTCTGGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCCAGCCTTCTTCTTCAGCTTGATCTTCTGGTTGAACCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTGGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATACCCAGTTGAAAGCTTTAGATTCTTTATTATTCCTTATTGGACATGTAACTTACTCAGGAAAGTCATATACCGAAGCTTGGTTACTCAAGGTTGCAGGATTTGATCAACCTTACAATGCTTTAATGAAGGCCGAGCAGTTGGGACAGTATGACTCTGATTTGATGGAAACCATGGAGGATGAAAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTAGAAGAATGTCTAAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTCAACTCTTCCTGATACTGGCATAAAGGATGTTGCTCGCAAATCCTTGCTTGACAAACTTATAAATGTCATCCAGTCATCTAAGAACTTGGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGACTTTCATTGGTGACCCAATTGCCCATGAATCACTTAGAGTTTATGCTAAAAGCATGTATAGAATCATGAGGAAGCTGAAGAAATATTCGGTGGTGGCAATTGATATTATGAAAGCCTTACTAAATTTAGAATCTGTTGATGTGACAGAATTATGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCCAATGGGGAGGTGCTTTCCTTGCTATATATGAATGGTCAAGTCTTGAGTGGACACTCTGATGGAACTATAAAGGTGTGGGATGCAAAAAAGAGAATTCCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACTTCTCTCTGTTCTTCAGTTGATAGACTATACAGTGGTTCCTTAGACAAAACCATTCGGGTTTGGACAATTAAACCTGATGAGATTAAATGCATAGATGTTTATGATGTTAAGGAAGCAGTGTATGAGCTGACAGCAAATGCTAAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAATTGGTCCGAGGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGTCTAGCTGTTGCTGGGGACAAACTGTATTGCGGCTGCTCTGGTTACAGCATTCAGGAGGTCGACTTGTCCAAACATACATCAAATTCATTCTTCTCAGGCACAAGAAAATTGTTGGGAAAACAAACCATACACTCCATTCAAATTCATGATGGTTACCTATTTGCTAGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCACTTTCCTCCAAAATGATGGTGGGATCACTCTCAACTGGACTTGACATCCATCGCATAGTCATCAATAGTGACTTCATATTTGCCGGTACGAAATTTGGCACAATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCAGGTGGTCATACAAAAATCACATCACTAGTGTCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4458 0.386 MAGNFRFTMDQKDIVRFLTTTVDSFIQDRLINKEQRIQHKEQCAERLAAEDGSYDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWANLNLSYLWKLRNNIQNCVFHVLEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHKLMMEVIPDASDMSFTADFDQFFNESLVFSMRPHQLDKLQKLEKLYGESLDENTKLYAKYYKDCMNSDGTSSKKVAPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSAGFSLTSRSKDGGNETIRENSTSSHSKAEKSSIWGTKEIIIEENEDDSDSELDDASEDSDNKSNIFSPEMKMVKDEEDIEQKVNLSNQKSQINSPYIFSPLDSPRNAPNISSSKPDTHSKREPKCLRLLSSRFRDSTIAESLSLSMDMSTDHIFYSDNEVMVLKNIQRNNHNQTLSMNHDNENSLVLNDSSLCESDEGYQSCISLPKLEKLTIGTKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSANTLPKTNYVLKRLITSWKEQNPELAQEFSNSNTPRDCSPSTKDIPMLSIIQRTNDSPGHKHKDNYIRQRSNRFMRVAVATSPTSVLSQAAVETIINSLKPYISSLCTSENLQECEKAVLEIARLWKDSKTDPQIHAYLSKPTIISGLVEILSASLNREVLKTSIYILSELIFLDESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQLKPIFAQLSEHELIPSLVQVIQNKNEELDNFQLVIDPKDAAIAVIEQILMGGDEHSRSFNALSVISANGIPALAKYLEKMEGRKSVVSILLCCMQAEKGCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTFCNQILQTIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNTQLKALDSLLFLIGHVTYSGKSYTEAWLLKVAGFDQPYNALMKAEQLGQYDSDLMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLATWLTHMLSTLPDTGIKDVARKSLLDKLINVIQSSKNLEEKILATLALKTFIGDPIAHESLRVYAKSMYRIMRKLKKYSVVAIDIMKALLNLESVDVTELWSCKEVVELDLSSNGEVLSLLYMNGQVLSGHSDGTIKVWDAKKRIPRVIQETHEHTKAVTSLCSSVDRLYSGSLDKTIRVWTIKPDEIKCIDVYDVKEAVYELTANAKLACYVTQGTGVKVFNWSEAPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKHTSNSFFSGTRKLLGKQTIHSIQIHDGYLFASGSSVDATAGKIFSLSSKMMVGSLSTGLDIHRIVINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1803 1485 MobiDBLite consensus disorder prediction 299 417 - -
Apr8g1803 1485 Gene3D - 1182 1485 IPR015943 GO:0005515
Apr8g1803 1485 CDD RING-Ubox_PUB 516 558 IPR045210 -
Apr8g1803 1485 Gene3D - 657 936 IPR011989 -
Apr8g1803 1485 SUPERFAMILY ARM repeat 622 1150 IPR016024 -
Apr8g1803 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1451 1485 IPR001680 GO:0005515
Apr8g1803 1485 Pfam WD domain, G-beta repeat 1245 1273 IPR001680 GO:0005515
Apr8g1803 1485 Pfam WD domain, G-beta repeat 1217 1232 IPR001680 GO:0005515
Apr8g1803 1485 Pfam WD domain, G-beta repeat 1453 1482 IPR001680 GO:0005515
Apr8g1803 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 594 IPR013083 -
Apr8g1803 1485 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Apr8g1803 1485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1451 1485 - -
Apr8g1803 1485 PRINTS G protein beta WD-40 repeat signature 1219 1233 IPR020472 -
Apr8g1803 1485 PRINTS G protein beta WD-40 repeat signature 1261 1275 IPR020472 -
Apr8g1803 1485 PRINTS G protein beta WD-40 repeat signature 1470 1484 IPR020472 -
Apr8g1803 1485 MobiDBLite consensus disorder prediction 364 378 - -
Apr8g1803 1485 MobiDBLite consensus disorder prediction 299 325 - -
Apr8g1803 1485 MobiDBLite consensus disorder prediction 379 409 - -
Apr8g1803 1485 SUPERFAMILY WD40 repeat-like 1217 1484 IPR036322 GO:0005515
Apr8g1803 1485 Pfam U-box domain 513 583 IPR003613 GO:0004842|GO:0016567
Apr8g1803 1485 SUPERFAMILY RING/U-box 510 584 - -
Apr8g1803 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1244 1276 IPR001680 GO:0005515
Apr8g1803 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1219 1232 IPR001680 GO:0005515
Apr8g1803 1485 SMART WD40_4 1237 1274 IPR001680 GO:0005515
Apr8g1803 1485 SMART WD40_4 1194 1232 IPR001680 GO:0005515
Apr8g1803 1485 SMART WD40_4 1442 1483 IPR001680 GO:0005515
Apr8g1803 1485 MobiDBLite consensus disorder prediction 337 351 - -
Apr8g1803 1485 ProSiteProfiles U-box domain profile. 511 586 IPR003613 GO:0004842|GO:0016567
Apr8g1803 1485 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1485 - -
Apr8g1803 1485 SMART Ubox_2 515 579 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1803 Apr-Chr8 28537644 28544478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1803 503 583 U-box Gene Family AT1G49780 49.383 4.24e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1803 - - gmx:100776142 2590.07