Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1793 ATGGCGGATGCACCAACGAGCCCAGCGGGTGGAAGTCACGAGAGTGGGGGCGAGCAGAGTCCACGGGGTTCATCGTCTGGTGCGAGGGAGCAAGACCGCTACCTTCCCATTGCTAACATCAGTCGCATCATGAAGAAGGCGTTGCCACCCAATGGCAAGATTGCGAAGGATGCTAAGGACACTATGCAAGAATGCGTTTCTGAATTCATTAGCTTCATTACCAGCGAGGCGAGTGAGAAGTGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGACGATTTGCTATGGGCGATGGCCACTTTAGGATTCGAAGACTATATTGAACCCCTTAAGGTGTACCTACAAAGGTACAGAGAGTTGGAGGGTGACACTAAAGGATCTGCTAGAAGTGGCGACGGATCTGCCAGACGAGATCAAATTGGCCATGCAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGTTGAACTATATTAGTTCGCAGGTGCAACCACAGCATCTGGTTATGCCATCAATGCAAAGTCATGAATAG 531 0.4953 MADAPTSPAGGSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLQRYRELEGDTKGSARSGDGSARRDQIGHAGQNAQLVHQGSLNYISSQVQPQHLVMPSMQSHE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1793 176 MobiDBLite consensus disorder prediction 12 27 - -
Apr8g1793 176 SUPERFAMILY Histone-fold 31 136 IPR009072 GO:0046982
Apr8g1793 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Apr8g1793 176 Gene3D Histone, subunit A 21 156 IPR009072 GO:0046982
Apr8g1793 176 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Apr8g1793 176 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Apr8g1793 176 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Apr8g1793 176 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Apr8g1793 176 MobiDBLite consensus disorder prediction 1 33 - -
Apr8g1793 176 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Apr8g1793 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1793 Apr-Chr8 28451874 28460856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1793 7 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.892 1.92e-81 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr8g1793 CBFD_NFYB_HMF 9.2e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1793 K08065 - gmx:100779577 320.087