Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1785 ATGGAGCAGGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAGGAGGTTGAGATGGACGACATGAAGAAGAGGCTGAAGGAGATCGAGGAAGAAGCAAGCGCTCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGTCCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTCGATTCGCGGTCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGGGTGACAATACTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCAGAATGCTCTCCTGTTAAATGAATCGGAATTGCATGGTCGACAACTGAAGGTCTCTGCTAAGCGTACAAATATTCCTGGAATGAAGCAGTATTTTGGAAGAAGACCTACTGGTTTCCGACCAAGGAGGCCTTTCATGCCGTCTCCATTCTATCCACCATATGGTTATGGAAGGGTTCCTAGGTACAGAAGACCAACGCGATACAGGCCATACTAG 585 0.4632 MEQEEHEVYGADIPDEEVEMDDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGPSATQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYFGRRPTGFRPRRPFMPSPFYPPYGYGRVPRYRRPTRYRPY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1785 194 SMART rrm1_1 71 142 IPR000504 GO:0003723
Apr8g1785 194 CDD RRM_II_PABPs 71 142 - -
Apr8g1785 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Apr8g1785 194 Coils Coil 13 47 - -
Apr8g1785 194 Gene3D - 12 143 IPR012677 -
Apr8g1785 194 SUPERFAMILY RNA-binding domain, RBD 58 169 IPR035979 GO:0003676
Apr8g1785 194 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 20 193 - -
Apr8g1785 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Apr8g1785 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 20 193 - -
Apr8g1785 194 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1785 Apr-Chr8 28379190 28387319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1785 71 142 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 6.53e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1785 K14396 - gmx:100527545 298.13