Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1771 ATGCTTGGAATGATCCAAAATGAATGGGATGCACTAATGCTATCTAATTTTGCTTTGGAGCAACAATTGCACATCGCAAGGCAAGAGCTAAGTCATGCTCTCTATCAGTATGACGCTGCATGCCGAGTGATAACAAGACTGAAAAAAGAACGAGATGAAGCTAGATCATTGCTTGCACAAGAAAATAGTAACTTCACCGTTTCTGCCCCCAGTGCAGTAACAGTAAATGCTTCTGTCGCGAGCAATGGGAAAAGAGCTGCTGAGGATGAGGAACTAGCGCCTCATGGAAAGAAAATACATTCTGGAATAACTTCTGCCGTAATTTCCGAGCTAACTGACTGTGGTAAAGCTCTCCACCAACGGAGGAGAAGGCGGCAGATTCCTGACACTTTGGCCCCTGTTGATGCTATAGACGGATATACCCAAATATCTAGTCATCCCATTCACAAAACAAGCAAGCCGGGCATTAAATGTCTTGACGTTCTTTATTCTAAGGACATAATTGCCTCTGGAGGGATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTATCCACACTCAGTGGTCACTCAAAAGAGGTTACAAGTGTAAAGTTTGTAGCTCAGGGTGGTTTGTTTTTAACTGGTTCAGCCGATAAGACAGTTCGTTTGTGGCAAGCGTCGGATGAAGGTACCTATAACTGCAGGGACATCTTGAGGGATCATACAGCTGAGGTGCAAGCCATCACTGTCCATGCTACCAATGATTACTTTGTAACTGCTTCGCTTGACAGCACTTGGTGCTTTTATGAACTTTCTTCTGGAACATGTCTAACTCGGTATGTATGTGTTGTTTTCGATAATTCAGGTTCTTGTGGAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTCCTTCTTGGAACTGGCAGCTCAGATGGTATTGTTAAGATCTGGGATGTAACAAGTCAGTCAAGTATTGCTATGTTTGAAGATCATGTAGGGCCAGTGACCGCCATATCCTTTTCTGAGAATGGCTACGTCCTTGCGACGACAACTCAAGATGGTGTAAAGCTTTGGGATCTACGTAAAGGGAAGAACTTCGGCAATTTTGCTCCATATGACTCAGAAACACTAACAAACTCAGTGGAGTTCGACCATAGTGGATCTTACCTTGCAACTGCAGGCTCTGATTTAAGGATTTACCGAGCTACAAATGTGAAATCTGAATGGAATTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAAGTCAACTGTGTTAAATTTGGTCCAGATGCAAAATACATTGCAGTGGGATCAATGGACCGGAATCTTCGAATATTTGGCCCACCAAATGAAGGTGGACCAGTGAATCACGAGGTGCCTTGA 1386 0.4329 MLGMIQNEWDALMLSNFALEQQLHIARQELSHALYQYDAACRVITRLKKERDEARSLLAQENSNFTVSAPSAVTVNASVASNGKRAAEDEELAPHGKKIHSGITSAVISELTDCGKALHQRRRRRQIPDTLAPVDAIDGYTQISSHPIHKTSKPGIKCLDVLYSKDIIASGGIDTNAVIFDRPSGQILSTLSGHSKEVTSVKFVAQGGLFLTGSADKTVRLWQASDEGTYNCRDILRDHTAEVQAITVHATNDYFVTASLDSTWCFYELSSGTCLTRYVCVVFDNSGSCGGYTSAAFHPDGLLLGTGSSDGIVKIWDVTSQSSIAMFEDHVGPVTAISFSENGYVLATTTQDGVKLWDLRKGKNFGNFAPYDSETLTNSVEFDHSGSYLATAGSDLRIYRATNVKSEWNCIKTFPDLSGTGKVNCVKFGPDAKYIAVGSMDRNLRIFGPPNEGGPVNHEVP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 223 IPR001680 GO:0005515
Apr8g1771 461 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 448 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 367 IPR001680 GO:0005515
Apr8g1771 461 CDD WD40 155 447 - -
Apr8g1771 461 Pfam Prp19/Pso4-like 1 59 IPR013915 -
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 320 - -
Apr8g1771 461 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 277 IPR001680 GO:0005515
Apr8g1771 461 Coils Coil 44 64 - -
Apr8g1771 461 Gene3D - 131 448 IPR015943 GO:0005515
Apr8g1771 461 SUPERFAMILY WD40 repeat-like 152 447 IPR036322 GO:0005515
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 223 - -
Apr8g1771 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
Apr8g1771 461 Pfam WD domain, G-beta repeat 293 317 IPR001680 GO:0005515
Apr8g1771 461 Pfam WD domain, G-beta repeat 325 358 IPR001680 GO:0005515
Apr8g1771 461 Pfam WD domain, G-beta repeat 185 222 IPR001680 GO:0005515
Apr8g1771 461 Pfam WD domain, G-beta repeat 408 447 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 229 268 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 184 223 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 361 400 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 276 317 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 139 181 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 320 358 IPR001680 GO:0005515
Apr8g1771 461 SMART WD40_4 407 448 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1771 Apr-Chr8 28243471 28250815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1771 1 452 U-box Gene Family AT1G04510 64.823 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1771 K10599 - gmx:100527039 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1771 8 28243471 28250815 Apr8g1771 8 28243471 28250815 ECH