Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1770 ATGAAACTTTATGGGGCTGAGAAGGACATGGCAAGGAAGAAACTTGCAAAGAATCAAAGTTGGATTGCTATTACCACAGATATATGGACTGCAAGCAACCAAAATAAGGGTTCTTCTTCTAATGCAATCACATACTTGGCATATGGCACAATTGTAGAAGATCGAGATGTTAATGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTTTGTAACCCTGAATTGTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAATTGTTGCTATGAGGAGAACTCCTCATATGGCACAAACATATCTTTATCCGTAGATGTAGAAAATAAGTTCAATAGCAATAGCAATACAGTAACCACTCCAACTAGCACTACCACCACCAACAACAACACAGCCAACAGTAGTAATCTGTCTATTATCTTTGACTCTCAAGAAGAAATTGACAACGACATATCTGCGTCCATAGACTTCTCACTATCACCAGCTTTCAATGTTCCATCATTTCTTCCAGTCACATCCCACCAAGAACAGTTTGATTTCTCTTCTGTGCAGCCTCAGGTCCAACTAGCAGCATGTTCAGCTGTGGAGGGCTTTTCTCAGTATCCCACTGACTCTGTTGCACCACTTATGGGAGCTCCATTACCATCCGTTTTTGAGGAGGATTGCATATCCTCTGTCCATTCTTATGTGCCTCTGAACCCTTCATCTCCTTCTTGCACCTATCTTAATGCTGGCATGCCACCATACATGCCTCATGGGCCCCTTAGCACTGCCTTATCAACTGATAGTTCTGGGATATTTGGTGGGGGCATTCTTCTTGGTGCTGATCTTCAGACACAAGAACTTGAATACCAGGGAGAAAATGGAAGAATGTATTGTACAGATTCAATTCAGCGGGTGTTTAACCCTCCTGACCTTCAGACACTTAGTACTGAGAGTCAGCAACTTGTAGCCGGGACTGGCAGTTCTGCTTCTTTGACACCAGAAATCTCAAACTTGGAGGACTCTTCATTCAAGGTTGGAAAACTCTCTGTTGAACAAAGGAAAGAAAAAATCAATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGCCGCAAAACTCTGGCAGATAGCAGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACCAATAGAACTACTAGTAGCAATCATGAAGAAGATGATGAAGAAGAAGTAGTTGTGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1353 0.4154 MKLYGAEKDMARKKLAKNQSWIAITTDIWTASNQNKGSSSNAITYLAYGTIVEDRDVNDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYGTNISLSVDVENKFNSNSNTVTTPTSTTTTNNNTANSSNLSIIFDSQEEIDNDISASIDFSLSPAFNVPSFLPVTSHQEQFDFSSVQPQVQLAACSAVEGFSQYPTDSVAPLMGAPLPSVFEEDCISSVHSYVPLNPSSPSCTYLNAGMPPYMPHGPLSTALSTDSSGIFGGGILLGADLQTQELEYQGENGRMYCTDSIQRVFNPPDLQTLSTESQQLVAGTGSSASLTPEISNLEDSSFKVGKLSVEQRKEKINRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTNRTTSSNHEEDDEEEVVVKDEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1770 450 PANTHER CCT MOTIF FAMILY PROTEIN 58 450 - -
Apr8g1770 450 Pfam CCT motif 352 394 IPR010402 GO:0005515
Apr8g1770 450 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 58 450 - -
Apr8g1770 450 MobiDBLite consensus disorder prediction 390 417 - -
Apr8g1770 450 MobiDBLite consensus disorder prediction 390 409 - -
Apr8g1770 450 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1770 Apr-Chr8 28214728 28227590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1770 332 401 C2C2-CO-like Transcription Factor Family AT5G24930 38.571 9.70e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr8g1770 CCT 3.9e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1770 - - aprc:113871720 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1770 8 28214728 28227590 Apr8g1770 8 28214728 28227590 ECH