Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1763 ATGGATTCGGATCAGGGAAAGCTCTTCATCGGTGGGATTTCGTGGGATACTACAGAGGATAAGCTTAAGGACCATTTCAGCAACTACGGTAACGTTTTGAGCACTTCCGTTATGCGCGAGAAGAACACCGGAAAGCCCCGAGGTTTCGGCTTTGTTGTCTTCGCAGATCCTTCTATTCTCGACAGGGTTCTTGAAGATAAGCACGTTATCGACGGAAGAACGGTTGATGCCAAGAGGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCTAGAGCTGGAAATCCCAATTCTGGGATGAATTCTGGAAACGGTGGAAATATCAGAACCAAAAAGATATTTGTTGGAGGATTGCCGCCCACCCTAACTGAAGAAAAATTCCGTCAGTACTTTGAATCTTATGGACATGTAACTGATGTAGTAGTCATGTATGATCAGAATACTGGACGACCACGGGGCTTTGGGTTTATTTCATTCGATACTGAGGAGGCTGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTGAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGACGCAAATCCTGGTGCAAGTGGCCGCATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGCTATCAAGGCTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAACCTCAAAGTGCTGCAGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGCTATGGGTATGGTCCGGCTAATAATGGCATTGGTTATAGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGATATGGTGGGCCTGCTGGTGCAACATATGGGAATCCAAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCACAGGCTCCTTCTGGTTATGGGTCTATGGGCTATGGGAACACCGCTCCTTGGGGTGCACCCAGTGGTGGTGCTGGATCTGGTAGTGGTGGTCCTGGTTCAGCAACTGCGGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGAAATCAAGGTTATGGATATGGTGGGTATGGCGCATATGGTGGAAGTGATAGTTCTTATGGGAATTCAAATGTATATGGTACTGTTGGAGGGCGTACTGGGAGTGCTCCAAACAGCAATGCCAGTGGTCCTGGTGGAAATGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGAAATGGTGCCCATGGTGGACAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1341 0.4862 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGNVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAGNPNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYSAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGSGGPGSATAGQSPGGAAGYGNQGYGYGGYGAYGGSDSSYGNSNVYGTVGGRTGSAPNSNASGPGGNELTSSGGSGNYMGNGAHGGQVGYGGGYGGAQSRQAQQQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1763 446 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 444 - -
Apr8g1763 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Apr8g1763 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Apr8g1763 446 Gene3D - 4 88 IPR012677 -
Apr8g1763 446 MobiDBLite consensus disorder prediction 382 423 - -
Apr8g1763 446 SUPERFAMILY RNA-binding domain, RBD 110 218 IPR035979 GO:0003676
Apr8g1763 446 Gene3D - 107 230 IPR012677 -
Apr8g1763 446 MobiDBLite consensus disorder prediction 382 419 - -
Apr8g1763 446 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 444 - -
Apr8g1763 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Apr8g1763 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Apr8g1763 446 MobiDBLite consensus disorder prediction 84 107 - -
Apr8g1763 446 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Apr8g1763 446 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Apr8g1763 446 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Apr8g1763 446 SMART rrm1_1 7 78 IPR000504 GO:0003723
Apr8g1763 446 SMART rrm1_1 113 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1763 Apr-Chr8 28163691 28167421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1763 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 2.20e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1763 K14411 - gmx:100786882 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1763 8 28163691 28167421 Apr8g1763 8 28163691 28167421 ECH