Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr8g1763 | ATGGATTCGGATCAGGGAAAGCTCTTCATCGGTGGGATTTCGTGGGATACTACAGAGGATAAGCTTAAGGACCATTTCAGCAACTACGGTAACGTTTTGAGCACTTCCGTTATGCGCGAGAAGAACACCGGAAAGCCCCGAGGTTTCGGCTTTGTTGTCTTCGCAGATCCTTCTATTCTCGACAGGGTTCTTGAAGATAAGCACGTTATCGACGGAAGAACGGTTGATGCCAAGAGGGCCTTCTCAAGAGAGGATCAACAAATTTCTGTCACTTCTAGAGCTGGAAATCCCAATTCTGGGATGAATTCTGGAAACGGTGGAAATATCAGAACCAAAAAGATATTTGTTGGAGGATTGCCGCCCACCCTAACTGAAGAAAAATTCCGTCAGTACTTTGAATCTTATGGACATGTAACTGATGTAGTAGTCATGTATGATCAGAATACTGGACGACCACGGGGCTTTGGGTTTATTTCATTCGATACTGAGGAGGCTGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTGAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGACGCAAATCCTGGTGCAAGTGGCCGCATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGCTATCAAGGCTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAACCTCAAAGTGCTGCAGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGCTATGGGTATGGTCCGGCTAATAATGGCATTGGTTATAGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGATATGGTGGGCCTGCTGGTGCAACATATGGGAATCCAAATGTCCCTAATGCTGCTTATGCTGGTGGTCCACCAGGTGGCCCAAGGAGTTCATGGCCTGCACAGGCTCCTTCTGGTTATGGGTCTATGGGCTATGGGAACACCGCTCCTTGGGGTGCACCCAGTGGTGGTGCTGGATCTGGTAGTGGTGGTCCTGGTTCAGCAACTGCGGGTCAGTCCCCTGGTGGAGCTGCTGGATATGGAAATCAAGGTTATGGATATGGTGGGTATGGCGCATATGGTGGAAGTGATAGTTCTTATGGGAATTCAAATGTATATGGTACTGTTGGAGGGCGTACTGGGAGTGCTCCAAACAGCAATGCCAGTGGTCCTGGTGGAAATGAACTAACAAGTAGTGGTGGCAGTGGCAACTATATGGGAAATGGTGCCCATGGTGGACAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA | 1341 | 0.4862 | MDSDQGKLFIGGISWDTTEDKLKDHFSNYGNVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRAGNPNSGMNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAPGYGYGPANNGIGYSAYGSYGGATAGYGGPAGATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTAPWGAPSGGAGSGSGGPGSATAGQSPGGAAGYGNQGYGYGGYGAYGGSDSSYGNSNVYGTVGGRTGSAPNSNASGPGGNELTSSGGSGNYMGNGAHGGQVGYGGGYGGAQSRQAQQQ* | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr8g1763 | 446 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 444 | - | - | |
Apr8g1763 | 446 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Apr8g1763 | 446 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 189 | IPR000504 | GO:0003723 | |
Apr8g1763 | 446 | Gene3D | - | 4 | 88 | IPR012677 | - | |
Apr8g1763 | 446 | MobiDBLite | consensus disorder prediction | 382 | 423 | - | - | |
Apr8g1763 | 446 | SUPERFAMILY | RNA-binding domain, RBD | 110 | 218 | IPR035979 | GO:0003676 | |
Apr8g1763 | 446 | Gene3D | - | 107 | 230 | IPR012677 | - | |
Apr8g1763 | 446 | MobiDBLite | consensus disorder prediction | 382 | 419 | - | - | |
Apr8g1763 | 446 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 1 | 444 | - | - | |
Apr8g1763 | 446 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 180 | IPR000504 | GO:0003723 | |
Apr8g1763 | 446 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Apr8g1763 | 446 | MobiDBLite | consensus disorder prediction | 84 | 107 | - | - | |
Apr8g1763 | 446 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 109 | IPR035979 | GO:0003676 | |
Apr8g1763 | 446 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Apr8g1763 | 446 | CDD | RRM2_DAZAP1 | 110 | 189 | IPR034131 | GO:0003723 | |
Apr8g1763 | 446 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Apr8g1763 | 446 | SMART | rrm1_1 | 113 | 185 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr8g1763 | Apr-Chr8 | 28163691 | 28167421 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr8g1763 | 8 | 200 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.000 | 2.20e-09 | 57.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr8g1763 | K14411 | - | gmx:100786882 | 598.201 |