Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1746 ATGGATCTTGTAAGCAAAAGATACTTGATCTATGTGTCACAACATGGGTCACAGGCTCTTTCTCCAATCACAAGTCCTAGTAGTTCAATCTTCCATCCTCATCTGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCTATTATAGGAATAATGGCCACAGCTTTCTTGCTGGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGTATTGATCTTTTAAGACGTTTCTCTCCATCTAGGAGGCGTGAAGATAGATCACCAATGTACTCACCAGGCACAGAAACTCGTGGATTAGATGAGGCTGTGATCCGGTTAATCCCAGTGATTCAGTACAAAACACAAGGAAATGGAGAGTTTGGAGAAAGAAGCACATGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAACTCAGGATTATACCTAACTGCAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCTTGACAAGCAGATTCCATATTGATCAGCTTCTTTCTCTAAGGCCTTCTTCCCCTCAAGATCAAAACCCACCAATGGAAAACCTCATTGGTGGTGATGAAGATTTTGTCGTGATTGAATTGGGTAATGATCATGGTAGAGGCCAAAATTTGCAAGGAAGACAAGAAAGAGCCAATGCTATGGAGTTACCAACATGTCCTGTTAGTCCTTCACGAAGGAAGTTGGAGCATAGAACTGAGCAGAAGAAAGCAATGAAACTTAATAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGACCAGTTTTCAGTTCAACCCATCAGAAGGTCTTTCTCTATGGATTCATCGGGAGATAGACAATTTTATTTAGCAGTTCAAGAAGCTCTGAAGCAACGAAACAAGCAAGTCAATAATGATGTAAGCTCCATTGAAGGATGCAGCGGAAGTGGTAGAGCCAAAAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTTCTGTGCAACCTGTTTATTTGGCCCCCTGA 1080 0.4139 MDLVSKRYLIYVSQHGSQALSPITSPSSSIFHPHLHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREDRSPMYSPGTETRGLDEAVIRLIPVIQYKTQGNGEFGERSTCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRFHIDQLLSLRPSSPQDQNPPMENLIGGDEDFVVIELGNDHGRGQNLQGRQERANAMELPTCPVSPSRRKLEHRTEQKKAMKLNKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALKQRNKQVNNDVSSIEGCSGSGRAKRSFFSFGHGSRSRSSVQPVYLAP* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1746 359 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Apr8g1746 359 CDD RING-H2_PA-TM-RING 132 175 - -
Apr8g1746 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Apr8g1746 359 PANTHER RING-H2 FINGER PROTEIN ATL16 25 358 - -
Apr8g1746 359 SMART ring_2 133 174 IPR001841 -
Apr8g1746 359 PANTHER RING-H2 FINGER PROTEIN ATL16 25 358 IPR044600 GO:0016567|GO:0016740
Apr8g1746 359 SUPERFAMILY RING/U-box 132 181 - -
Apr8g1746 359 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1746 Apr-Chr8 27929911 27934318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1746 33 359 C3H Transcription Factor Family AT1G04360 53.521 3.60e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1746 - - gmx:100775286 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1746 8 27929911 27934318 Apr8g1746 8 27929911 27934318 ECH