Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1717 ATGAATTCAGAAAAGCCACTCAGTTCTGAGATTTTAAGTGAAGAAACGGATCAACAAGAAGAAGCACAATATGACAATGAAGGAACCAAACGCTCTTATGAGTGCACATTCTGCAAGCGAGGCTTCACAAACGCTCAGGCTTTAGGGGGTCATATGAATATCCATAGGAGAGACAGAGCCAAAGCCAAACAAGTTGTTCCAAACTCTTCACTCCCATTAATAAACAAATTCAACAATGATGAATCCATGACCTTTCCTTTTGCTTCTGAAATTCCAAACCAACCCACAAGGCTTTATTCCATTTTGGAGTCTCAGAGGAACTGTGACGTGTATTTTCATCCCCCGCCACCTTCGCATACCTTTCAATATGAGTTTTATAACCCAAGGTCTCGGCCTATGAGTTTGAACCAAGAGCTTCGGGGTGCCAATTTGAGTCTCCAAATTGGTCCAAGTCATGTTGATGATATTCATCAAGTTAGGAGAGGAAATCAGAAAGATAGTGAAGTGGACTTGGAGCTCAGACTTGGGTATGATCCATATTAA 543 0.4144 MNSEKPLSSEILSEETDQQEEAQYDNEGTKRSYECTFCKRGFTNAQALGGHMNIHRRDRAKAKQVVPNSSLPLINKFNNDESMTFPFASEIPNQPTRLYSILESQRNCDVYFHPPPPSHTFQYEFYNPRSRPMSLNQELRGANLSLQIGPSHVDDIHQVRRGNQKDSEVDLELRLGYDPY* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1717 180 PANTHER OS07G0101800 PROTEIN 7 179 - -
Apr8g1717 180 Gene3D Classic Zinc Finger 8 85 - -
Apr8g1717 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Apr8g1717 180 Pfam C2H2-type zinc finger 33 57 - -
Apr8g1717 180 MobiDBLite consensus disorder prediction 1 27 - -
Apr8g1717 180 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Apr8g1717 180 SMART c2h2final6 33 55 IPR013087 -
Apr8g1717 180 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 7 179 - -
Apr8g1717 180 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1717 Apr-Chr8 27509341 27509883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1717 33 73 C2H2 Transcription Factor Family AT5G43540 70.732 3.86e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr8g1717 zf-C2H2_6 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1717 - - vun:114191365 263.462