Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1714 AATGTTGATGATGTCTCAGGAACGTATGAAGTGGAATTTTCGAGTATGAGAGCTAAGAGTTTGATAAGTAAGAGGAAGTTTAAGATAAGAGAGAGGTTGAGAAAGATGATAAAGTGTATATGTTCCGGGGAGCAGTTAAGGGTCGATGAAACAAGTTATTCATCAGAGTCTCTGGCAACGAGGGACTATTCAGCAAGTGGTTATTCTTCTCGTCCTGGTGAGACCGAAACAAAGGTGGACAATAGTAACATTGAAGAAGCAGAGTCATCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCTAGAGCTTTGTTAGGAAGACTGGAGTATCAGAAAGGAAATATCGAAGCTGCACTTCACGTATTTGAAGGAATAGATATTGCTGCAATCATTCCCAAGATAAAAATTTCTTTATCAAGAAGATGTGAAACCAATAGACGCCATTCACAGAGTGATGCAGTGCCTCCTATGTCAATGCATGCAGTTAGTTTACTTCTTGAAGCTGTTTTTCTAAAGGCTAAATCATTGCAGGCTCTTGGAAGGTTCCAAGATGCTGCTCAGTCATGCAAAACTATTTTAGACACTGTCGAATCTGCATTACCAGAGGGCTGGCATGAAAACTTTGTCTCAGATTGTAAATTACAAGAGACACTAGCAAATGCTGTAGAACTGCTTCCAGAGTTGTGGAAGCTTGCAGGCTCTCCTCAAGACGTTATCTCATCATTTAGGAGGGCCTTGCTTTATCATTGGAAAATTGACATTGAAGCCACTGCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTACAGTGGTTGTGAAGCAAGTCCTCCGGCTCTCCGCTCTCAGTTGGATGGTTCCTTTGTGCCAAGAAACAACATTGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAGTCTATTCTTGGAAACATTGTATGGGATCCCTCAATAATTGATCATCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTTTGGCTCAAAATGTTGAGGAATTGCTTCCTGAGAACATGGAGAGAAAAGAAAGATATTATACTCTAGCTCTTTGTTACTGTGGGGGAGGCAAAGATATGATTGCTTTAGATCTTTTGAGGAACTCTTTGAATTATAGAGAGAACTCAGACTGCATATGGGAATTACTCCTGGCTTCAAAAATTTGTGCAGATAACAAGGTTTGTGAGGAAGATGGAATCAAATATTCTTCCAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAGATGGAAGCTATTGCAAATTGCTTACTTGGTGTTCTACTGTCATCAAAATCCAGGTCAGCTGCTTCTGAATCAGAGAAGGTTTCGATGCAGTCTCAAGCACTTGGTGCTCTAAAAGCTGCTGAAAGAATGATGAGGGAAAGTGATCCTTATATTGTCCTTCATCTTTGTCTAGAATATGCTGAGCAGAGGGAGTTAGGAATTGCTTTTTATCATGCAAATAAACTGATTAAGCTTGAGGGTGGATCTAGTATTAATGGATATAAACTACTAGCAAGAATTTTATCAGCTCAAAAAAAGTTTGTAGATGCAGAGATTGTTATTGATGCAGCTCTAGATCAAAGTGGAAAATGGGATCAAGGAGAACTGTTGAGGACCAAAGCTAAACTACGGATTGCCCAGGGAAAATTAAAGAATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAAAATAAAAGTGTAGGCACTGCTGGTAAGGTTGTGAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAACGTGTACACAGCCTTATCACAGTGGCAGGATGCTGAAGTTTGTCTTGCAAAATCTCGGGCTATTAATCCCTATTCTCCTTCTAGATGGCACTCAACAGGTTTACTTTTTGAAGCCAGAGGTCTTCATCAAGAAGCTCTGAAATCATTTAGGAAAGCACTAGATATTGAGCCCAACCATGTGCCCAGTTTGATATCCACAGCATGTGTACTCAGACAACTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTGCGGCTTGACAGAACAAACTCATCTGCTTGGTACAATCTTGGATTACTCTACAAAGCTGATTTGGGCACATCAACAGTGGAAGCTGTTGAATGCTTTGAAGCAGCGGCTCTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2235 0.4018 NVDDVSGTYEVEFSSMRAKSLISKRKFKIRERLRKMIKCICSGEQLRVDETSYSSESLATRDYSASGYSSRPGETETKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAIIPKIKISLSRRCETNRRHSQSDAVPPMSMHAVSLLLEAVFLKAKSLQALGRFQDAAQSCKTILDTVESALPEGWHENFVSDCKLQETLANAVELLPELWKLAGSPQDVISSFRRALLYHWKIDIEATARIQKEFALFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKSILGNIVWDPSIIDHLSFALSVSGEFMTLAQNVEELLPENMERKERYYTLALCYCGGGKDMIALDLLRNSLNYRENSDCIWELLLASKICADNKVCEEDGIKYSSKAISQLYGKCMQMEAIANCLLGVLLSSKSRSAASESEKVSMQSQALGALKAAERMMRESDPYIVLHLCLEYAEQRELGIAFYHANKLIKLEGGSSINGYKLLARILSAQKKFVDAEIVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKNAVETYTFLLAVLQVQNKSVGTAGKVVKGNRDRRLEMEIWHDLANVYTALSQWQDAEVCLAKSRAINPYSPSRWHSTGLLFEARGLHQEALKSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNSSAWYNLGLLYKADLGTSTVEAVECFEAAALLEESSPIEPFR* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1714 744 Gene3D Tetratricopeptide repeat domain 75 582 IPR011990 GO:0005515
Apr8g1714 744 Pfam Tetratricopeptide repeat 640 666 IPR019734 GO:0005515
Apr8g1714 744 ProSiteProfiles TPR repeat profile. 633 666 IPR019734 GO:0005515
Apr8g1714 744 PANTHER OS10G0471400 PROTEIN 28 744 - -
Apr8g1714 744 PANTHER PROTEIN NPG1 28 744 IPR043376 -
Apr8g1714 744 Gene3D Tetratricopeptide repeat domain 587 741 IPR011990 GO:0005515
Apr8g1714 744 SUPERFAMILY TPR-like 546 714 IPR011990 GO:0005515
Apr8g1714 744 SMART tpr_5 509 542 IPR019734 GO:0005515
Apr8g1714 744 SMART tpr_5 599 632 IPR019734 GO:0005515
Apr8g1714 744 SMART tpr_5 703 738 IPR019734 GO:0005515
Apr8g1714 744 SMART tpr_5 167 200 IPR019734 GO:0005515
Apr8g1714 744 SMART tpr_5 633 666 IPR019734 GO:0005515
Apr8g1714 744 SUPERFAMILY TPR-like 342 568 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1714 Apr-Chr8 27450548 27454446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1714 28 744 Calmodulin-binding Proteins AT4G28600 53.951 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1714 K21843 - gmx:100789469 1231.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1714 8 27450548 27454446 Apr8g1714 8 27450548 27454446 ECH