Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1688 ATGGGGCAAGGGCAATCCAAAGACGAGTTGCTCTTCCAGCAAGTCAGTTATGGGAACATCGAAGGAATCAAAGCCCTTCACAGAGAAGGTGCGAGCCTAGAGTGGATGGACAAAGAAGCGAAGACCCCCTTGATTGTTGCTTGTATGAATCATCAGCTTTATAATGTTGCTAAAACTCTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCCGGTCGTCATGGTGGGACTCCGTTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTATTGTTAAGTTACTCCTTTTGCATGGAGCCAATCCTTTAGTCTTGAATGATGATTGTCTAACTGCTCTTGAAGTTGCCAGGGCCAAAGGGCATGGCAATGCTGTTCGTGCAATTGAGAATCATCTATGCTTGTTCTGTGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCAAAGAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGTAATCTTACCAGACCCTACAAGTTGGAGCTTGCCATTTATTCTACTTTGCAGGATGCACGACCACGTACAATTATTGCACTGTGGAAGGCCAATTTACAAGAACCAAAGCTTCACCAGTCTGATCCATCAGTGACAATTGTTGATAACACTACTAAAAGTGGTAGATGTATGTGTGCAGTTAAGAGAAAAATTGGCGGAGATAAAAGGAGAAATTTAAGGGAAGATGAAAAAACACGTGTTAAACTTGGGCCTGCAAGTGAAAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGACAAGTCCAGGATTCTTGCAAAATAGTGTGGCTACAATTCCACCCACAGCACCACCAGCTGCAGAAGACCCGGACTTGGCTATGGCTATTAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCCTTTCCTGATGCCCAGCCTAACTTTGAAGCAAGCTCTTCAAGCAGTGCAGTGAATACAGGCAAGCAAGGTTTTCTGGGTACACCAAATCAAAGTACAAGTGATAGTGAGTTAGTACATGAAGCTAACCCGGGTGGCGTTGGGCAAGCTGATGCTGGTTTCGATTTGGATCCATCGGCTCCCCCAATTGCTGATGAAATTCCAACGGATGGCCCCATTCATTATCCATCAATTGATTTAAGCCCTGTCGATATGTCATCTCCAGTTGCTGAGGAGCTACCTAAAGAAGAAGAAAAAAATGCTAGTGGAAGTGGTTCATCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTAAACGAGGTGAAAGCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAAAAGAAGCGTTTAGTTGCTTCCATTTGTGTTGTGGCAATTTTTCTTGGTTTTCTGTATGTGTATGGTGGATCCATCTTTGGTTCTCAGAATGGTAGTTCATCTGCTCTCGAATATGGCAGCAGATCATTGAAAAGACTTGGCTCATCATATTTGGGTGCAGAGGATGATACTGATGGGAAGCAAGCTGAATCTTTATCAAGTTTCAGGCAGGGATATGGGGAGGATGATATTGTTCCAAAGAGTTTCCCTGTTTGTGATGATCGTCATATGGAGTTGATTCCCTGCTTGGATAGACACCTTATCTATCAAATGAGGATGAAACTGGACCTGTCTGTGATGGAGCACTACGAGAGACACTGTCCTCCTGCAGAAAGGCGGTACAATTGCTTGATTCCTCCACCATCAGGATACAAGATCCCTATTAAGTGGCCACAGAGCAGAGATGAAGTGTGGAAAGCAAATATCCCACATACTCACCTTGCTCATGAGAAGTCTGACCAAAATTGGATGGTTGTAAAAGGTGAAAAGATAGTGTTTCCTGGTGGCGGGACTCATTTTCACTATGGAGCTGGCAAGTACATTGCATCAATTGCAAATATGCTTAACTTTTCAAACAATAATCTAAACAATGAAGGAAGGTTGCGAACAGTGCTTGATGTTGGCTGTGGGGTTGCAAGTTTTGGAGCATATCTTCTTTCATCAGATATCATTGCAATGTCCTTGGCACCAAATGATGTGCATCAAAATCAAATCCAATTTGCCCTAGAAAGAGGAATTCCTGCATATCTTGGTGTCTTGGGAACTAAGAGACTCCCTTACCCAAGCAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTCGAATTGATTGGCTTCAAAGAGATGGAATACTACTACTTGAACTAGATCGCTTGTTAAGGCCAGGAGGTTATTTTGCATACTCATCCCCAGAAGCATATGCTCAGGATGAAGAGGATCTAAGGATATGGAGAGAAATGAGTGACCTTGTGGGGCGTATGTGTTGGAAAATAGCTGCAAAAAGGAACCAAACTGTCATCTGGCAAAAACCTTTGACAAATGACTGCTATATGGAAAGAGAGCCTGGTACTCGTCCTCCTCTTTGCCAATCTGATGATGACCCAGATGCAGTTTGGGGAGTAAATATGGAAGCTTGCATAACACCTTACAGTGATCGTGACAACAGAGCCAAGGGTAGTGGATTAGCTCCGTGGCCTGCAAGATTGACTAGTCCTCCTCCTAGATTAGCTGACTTTGGCTATTCAAATGAAATGTTTGAAAAGGACACGGACCTATGGCAAAAGAGAGTTGAAAAGTACTGGAATCTCTTGGGTTCCAAAGTCACATCAAACACATTGAGGAATATTATGGATATGAAAGCAAACATGGGTTCTTTCGCAGCTTCTCTTAGAGACAAGGATGCTTGGGTGATGAATGTTGTAACTAAGGATGGGCTAAACACACTTAAGCTTATATATGACAGAGGCCTCATTGGCACTACTCATGACTGGTGTGAAGCATTTTCAACATACCCCCGGACTTATGATTTACTTCATGCATGGACTGTCTTCTCTGACCTAGAAAAGAAAGATTGCAGTCCAGAGGATCTATTAATTGAGATGGATCGCATGCTTAGGCCTACTGGTTTTGTGATCATCAGGGATAAACAACCTGTGATTGATTTTGTTAAGAAGTACCTTAGTGCTTTGCACTGGGAAGCAGTTGCAACTGCAGATTCCAGTTCTGACTCTGTCCAGGATGGTGATGAAGCTGTTCTTATCATCCAGAAGAAAATGTGGCTCACTAGTGAAAGCTTCAGGGATACAGAATAG 3246 0.4365 MGQGQSKDELLFQQVSYGNIEGIKALHREGASLEWMDKEAKTPLIVACMNHQLYNVAKTLIELGANVNAYRPGRHGGTPLHHAAKRGLESIVKLLLLHGANPLVLNDDCLTALEVARAKGHGNAVRAIENHLCLFCGWLREFHGPGFLEVVAPQLVSKKVWVVVLPVGSRNLTRPYKLELAIYSTLQDARPRTIIALWKANLQEPKLHQSDPSVTIVDNTTKSGRCMCAVKRKIGGDKRRNLREDEKTRVKLGPASENDRQQLTWFSNACKGIPQTSPGFLQNSVATIPPTAPPAAEDPDLAMAISASLQSAMQERPPFPDAQPNFEASSSSSAVNTGKQGFLGTPNQSTSDSELVHEANPGGVGQADAGFDLDPSAPPIADEIPTDGPIHYPSIDLSPVDMSSPVAEELPKEEEKNASGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKAKKWGCPVCRAKKKRLVASICVVAIFLGFLYVYGGSIFGSQNGSSSALEYGSRSLKRLGSSYLGAEDDTDGKQAESLSSFRQGYGEDDIVPKSFPVCDDRHMELIPCLDRHLIYQMRMKLDLSVMEHYERHCPPAERRYNCLIPPPSGYKIPIKWPQSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIVFPGGGTHFHYGAGKYIASIANMLNFSNNNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDLRIWREMSDLVGRMCWKIAAKRNQTVIWQKPLTNDCYMEREPGTRPPLCQSDDDPDAVWGVNMEACITPYSDRDNRAKGSGLAPWPARLTSPPPRLADFGYSNEMFEKDTDLWQKRVEKYWNLLGSKVTSNTLRNIMDMKANMGSFAASLRDKDAWVMNVVTKDGLNTLKLIYDRGLIGTTHDWCEAFSTYPRTYDLLHAWTVFSDLEKKDCSPEDLLIEMDRMLRPTGFVIIRDKQPVIDFVKKYLSALHWEAVATADSSSDSVQDGDEAVLIIQKKMWLTSESFRDTE* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1688 1081 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 465 1079 IPR004159 GO:0008168
Apr8g1688 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 473 IPR013083 -
Apr8g1688 1081 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 465 1079 - -
Apr8g1688 1081 Gene3D - 3 144 IPR036770 -
Apr8g1688 1081 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Apr8g1688 1081 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Apr8g1688 1081 SMART ring_2 425 463 IPR001841 -
Apr8g1688 1081 Pfam Zinc finger, C3HC4 type (RING finger) 423 468 - -
Apr8g1688 1081 MobiDBLite consensus disorder prediction 324 356 - -
Apr8g1688 1081 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Apr8g1688 1081 ProSiteProfiles Zinc finger RING-type profile. 425 464 IPR001841 -
Apr8g1688 1081 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Apr8g1688 1081 MobiDBLite consensus disorder prediction 313 394 - -
Apr8g1688 1081 Gene3D Vaccinia Virus protein VP39 673 820 IPR029063 -
Apr8g1688 1081 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Apr8g1688 1081 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 557 1068 IPR004159 GO:0008168
Apr8g1688 1081 SUPERFAMILY RING/U-box 424 467 - -
Apr8g1688 1081 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 896 1027 IPR029063 -
Apr8g1688 1081 Pfam Ankyrin repeats (3 copies) 13 102 IPR002110 GO:0005515
Apr8g1688 1081 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 583 810 IPR029063 -
Apr8g1688 1081 SMART ANK_2a 75 104 IPR002110 GO:0005515
Apr8g1688 1081 SMART ANK_2a 39 69 IPR002110 GO:0005515
Apr8g1688 1081 SMART ANK_2a 6 35 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1688 Apr-Chr8 27176243 27204855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1688 417 471 C3H Transcription Factor Family AT3G06140 36.364 2.21e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1688 - - aprc:113870983 2169.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1688 8 27176243 27204855 Apr8g1688 8 27176243 27204855 ECH