Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1677 ATGGCAACTTTGCTTGGAAAGGAGAGTGGTTTGAACCTGAAGGAGACTGAACTTTGCCTTGGCTTGCCTGGTGGCGGTGGCGGCGGCGGCGGTGGTGGAGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAAGGCCACTGGGAAGAGAGGATTCTCTGAGACAGTTGATCTGAAGCTCAATCTTCAATCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGACAAGGCCATCCTTAAGGATCCTGCCAAGCCACCAGCCAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATATAGGAAGAACATGATGGCACAGAAGGTTAACAGTGAGGATGGTGCTGAGAAGACAACAAGCACCAATACTTCTGGGGCATTTGTCAAAGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTGGACCTCACAATGTACAAAAGCTACAAAGAGTTATCTGATGCTTTGGCCAAAATGTTCAGCTCCTTTACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATAATGAAAGGATCAGAAGCGATTGGGCTCGCGCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 738 0.4837 MATLLGKESGLNLKETELCLGLPGGGGGGGGGGGGGGSEVETPKATGKRGFSETVDLKLNLQSKEDLNENLKNVSKDKAILKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNSEDGAEKTTSTNTSGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1677 245 Pfam AUX/IAA family 44 236 IPR033389 -
Apr8g1677 245 SUPERFAMILY CAD & PB1 domains 124 226 - -
Apr8g1677 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Apr8g1677 245 MobiDBLite consensus disorder prediction 18 51 - -
Apr8g1677 245 Gene3D - 121 239 - -
Apr8g1677 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 238 IPR003311 GO:0005634|GO:0006355
Apr8g1677 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1677 Apr-Chr8 27026157 27028502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1677 124 230 B3 DNA Binding Superfamily AT3G61830 34.579 9.49e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr8g1677 AUX_IAA 4e-83 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1677 8 27026157 27028502 Apr8g1677 8 27026157 27028502 ECH