Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1676 ATGGAAAGCACTGTGGCGTATGAGAGTGATCTCAACCTCAAGGCAACTGAACTTAGGCTAGGGTTGCCGGGCACAGAGGAAAAAGCAGTGCCTGCAAGTGTTAAGACCAACAAAAGGCCATTGACTGAAACATCTGAGGAGTGTGCACCCCCTCCTGCCAAGGCAAAGTTAGTGGGGTGGCCACCAATCAGATCCTATAGGAAAAACAGCCTGCAGGAGAATGAGGGTGCAGGGATTTATGTGAAAGTGAGCATGGATGGAGCTCCTTATCTCAGAAAGATAGACTTGAGGGTCTATGGAGGCTACACACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGCTCACCATAGGGGAGTATTCTGAAAAAAAAGGTTATAAGGGATCTGATTATGCACCTACATATGAAGACAAGGAGGGTGACTGGATGTTAGTTGGAGATGTTCCATGGAATATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAGGCAAGGGGTTTGGCTTGTGGTGTATGA 528 0.4602 MESTVAYESDLNLKATELRLGLPGTEEKAVPASVKTNKRPLTETSEECAPPPAKAKLVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLRVYGGYTQLLKALENMFKLTIGEYSEKKGYKGSDYAPTYEDKEGDWMLVGDVPWNMFVTSCKRLRIMKGSEARGLACGV* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1676 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 172 IPR003311 GO:0005634|GO:0006355
Apr8g1676 175 Pfam AUX/IAA family 36 172 IPR033389 -
Apr8g1676 175 MobiDBLite consensus disorder prediction 24 53 - -
Apr8g1676 175 Gene3D - 72 175 - -
Apr8g1676 175 ProSiteProfiles PB1 domain profile. 78 165 IPR000270 GO:0005515
Apr8g1676 175 PANTHER AUXIN-INDUCED PROTEIN 10 172 - -
Apr8g1676 175 SUPERFAMILY CAD & PB1 domains 68 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1676 Apr-Chr8 27004058 27005553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1676 81 171 B3 DNA Binding Superfamily AT2G46530 39.560 5.06e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr8g1676 AUX_IAA 3.5e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1676 K14484 - gmx:100527777 296.589