Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1672 ATGGAACCGCCATTGCAGCAATCGTCGCCGCCACCGCGAACCGCCACCATCCTCGGAAAGTACCAACTAACCCGATTCCTAGGCCGCGGCAGCTTCGCCAAGGTGTACCAGGCGCGCTCCCTCATCGACGGCTCCACCGTCGCCGTCAAAATCATCGACAAGTCCAAGACCGTGGACGCCGCCATGGAGCCCCGCATAATCCGCGAGATCGACGCCATGCGCCGACTCCACCACCACCCAAACATTCTCAGAATCCACGAGGTGATGGCCACGAAGACCAAGATACACCTCGTCGTGGAGTTCGCCGCCGGCGGAGAGCTCTTCTCCCGAGTCTACCGGCGCGGTCGGTTACCGGAGTCCACGGCGCGCCGCTACTTCCAGCAGCTAGTCTCCGCGCTCCGCTTCTGCCACCGCAACGGCGTCGCGCACCGCGATCTCAAGCCGCAGAACCTCCTCGTCGACAGCGACGGCAACCTCAAGGTCTCTGACTTCGGCCTCTCCGCGCTCCCCGAGCAGCTCAATAACGGCCTCCTCCACACCGCGTGCGGCACGCCGGCGTACACAGCGCCGGAGATCCTCCGGCGCAGCGGCGGTTACGACGGGTCGAAGGCCGACGCATGGTCCTGCGGCCTAATCCTCTACGTGTTCCTCGCCGGTAACCTGCCGTTCGACGAATCGAACATTCCGGCGATGTGCAAGAAGATTTGCCGGCGAGATTACCAGTTCCCGGAGTGTATTTCGAAACCGGCACGTTTCGTGATATACCGGCTACTTGACCCGAACCCGGAAAGGCGAATGAGCCTTGAGGCTCTGTTTGGGAACGCGTGGTTTAAGAAATCGCTGAGAGAGGAAACGACGGAAGAGAGCGCGTTTGGGTGGGGTAAGGGTAGTTTCGAAGGGAAGGGTTCGGGTGTGAACGCGTTTGATATAATATCGATGTCTTCGGGTTTGGATTTGAGGGGATTGTTCGAAACGGCGTCGGATGGGGAGAATAGGAGGGAAAAGAGGTTCACTTCGAGTGCGAAGGTAGAGGTTGTGGAGGAGAAGGTTAAGGAAGTTGGTGGGGTTTTGGGGTTTAAGGTTGAGGTTGGGAAGAATAACAGTGCAATTGGGTTGGTTAAAGGAAAAGTGGCTTTGGTATTTGAGATGTTTGAGATTGTGCCTCATCAACTGCTTTTGGTCGCAGTGAAGGTTGTAGAAGGTGGCTTAGAGTTTGAAGAGCTTCACTGGGGGGATTGGAAAGCTGCGTTGCAAGACCTTGTACTTTCTTGGCACAACGATTCGTGA 1287 0.5734 MEPPLQQSSPPPRTATILGKYQLTRFLGRGSFAKVYQARSLIDGSTVAVKIIDKSKTVDAAMEPRIIREIDAMRRLHHHPNILRIHEVMATKTKIHLVVEFAAGGELFSRVYRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLVDSDGNLKVSDFGLSALPEQLNNGLLHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVFLAGNLPFDESNIPAMCKKICRRDYQFPECISKPARFVIYRLLDPNPERRMSLEALFGNAWFKKSLREETTEESAFGWGKGSFEGKGSGVNAFDIISMSSGLDLRGLFETASDGENRREKRFTSSAKVEVVEEKVKEVGGVLGFKVEVGKNNSAIGLVKGKVALVFEMFEIVPHQLLLVAVKVVEGGLEFEELHWGDWKAALQDLVLSWHNDS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1672 428 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1672 428 Gene3D Kinase associated domain 1, KA1 302 422 - -
Apr8g1672 428 PANTHER SERINE/THREONINE KINASE 13 426 - -
Apr8g1672 428 SUPERFAMILY Protein kinase-like (PK-like) 17 282 IPR011009 -
Apr8g1672 428 CDD CIPK_C 306 418 - -
Apr8g1672 428 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1672 428 Gene3D Transferase(Phosphotransferase) domain 1 12 295 - -
Apr8g1672 428 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1672 428 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Apr8g1672 428 Pfam NAF domain 305 362 IPR004041 GO:0007165
Apr8g1672 428 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 426 - -
Apr8g1672 428 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Apr8g1672 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1672 Apr-Chr8 26947500 26949559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1672 1 426 CBL-interacting serine-threonine protein kinases AT4G14580 58.469 1.30e-167 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr8g1672 Pkinase 5.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1672 K12761 - gmx:100784173 701.434