Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1642 ATGGCTTCAATGGATAGCCAAAAAGCAATAGAGCTCTTTGAAGGCCAAACTCTTCTGTACGTGCAGATATTTGGCTACCTAAGAACTATGTGTCTTAAATGGGCTGTCCAACTAGGTATTCCAGACATCATACACAACCATGGAAAGCCTATTACTCTTCCTCAGTTAGTGTCAACTTTGCAAATTTCACCAACTAAAGCTAGTTTTGTGCACCGGTTCATGCGCTTTTTGGCACACAATGGAATCTTTGATATCCACGAAAGCCTAGAAGAACATGAAATAACATATTCTCTAACCGCTGCATCAAAGCTTCTTGTCAAAAACAGTGGCCATTGTTTAACTCCTGTAGTTTTAGCGTTTACTGAGCAATTTATGATGGATAACTTACATCTGTTAGGGGAATGGACTCGTGGGGAGGACCCCACAATATTTGAGACAGCCTTTGGAACAAGCTTTTGGAAACTTCTTGAGAAAAATCCTGCATATATAAGTCTTTATAATGATGCAATGGCAAGTGATTCCCAGATGGTAAGCTTGGCATTGAAAAATTGTAGTTCAGTTTTTGAAGGGCTAGATTCCATTGTGGATGTTGCTGGTGGAACTGGAACCACAGCCAGAATTATCTGTGAGGCATTTCCTAAGTTGAAATGTGTTGTGATTGATCTTCCTCATGTTGTAGCAAACTTGACTGGAAGTAAGAATTTGAGTTTTGTTGGTGGTGACATGTTCGAATCCATCCCTGAAGCTGATGCAATTCTAATGAAGTTGATTTTACATGACTGGGATGATGAGAAATGCATTAAGCTCTTGGAAAAGTGTAAAGATTCTATTTCAAGCAAAGGCAAAAGAGGAAAAGTGATTATCATCGATACAATAATAAACGAAAAGCTAGATGAGCAGAATCTGAGTCAAACAAAGCTCAGTATGGATATAATGATGTTGACTATTAATGGAAAAGAGCGAACTGAAAAAGAATGGAAACAACTCTTCATCCAAGCAGGATTCACGCAATACAGAGTATTTCCCATCTTTGGTTATAAATCTCTTATTGAGGTCTCTCCGTAG 1065 0.3859 MASMDSQKAIELFEGQTLLYVQIFGYLRTMCLKWAVQLGIPDIIHNHGKPITLPQLVSTLQISPTKASFVHRFMRFLAHNGIFDIHESLEEHEITYSLTAASKLLVKNSGHCLTPVVLAFTEQFMMDNLHLLGEWTRGEDPTIFETAFGTSFWKLLEKNPAYISLYNDAMASDSQMVSLALKNCSSVFEGLDSIVDVAGGTGTTARIICEAFPKLKCVVIDLPHVVANLTGSKNLSFVGGDMFESIPEADAILMKLILHDWDDEKCIKLLEKCKDSISSKGKRGKVIIIDTIINEKLDEQNLSQTKLSMDIMMLTINGKERTEKEWKQLFIQAGFTQYRVFPIFGYKSLIEVSP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1642 354 Gene3D Vaccinia Virus protein VP39 106 354 IPR029063 -
Apr8g1642 354 Gene3D - 1 105 IPR036388 -
Apr8g1642 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Apr8g1642 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Apr8g1642 354 PANTHER O-METHYLTRANSFERASE 2 352 IPR016461 GO:0008168
Apr8g1642 354 Pfam O-methyltransferase domain 132 335 IPR001077 GO:0008171
Apr8g1642 354 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Apr8g1642 354 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 352 - -
Apr8g1642 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 110 352 IPR029063 -
Apr8g1642 354 SUPERFAMILY "Winged helix" DNA-binding domain 11 109 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1642 Apr-Chr8 26586424 26587613 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1642 30 340 Monolignol Biosynthesis Gene Families AT5G54160 32.915 2.95e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1642 K22588 K13262 gmx:100819796 555.058