Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1640 ATGGTCGTGAGCGGAGGGAAGCCTTTGAAACGCATGAAGAGGAGAGTCACCGCTGATTTCTACGATTTTCTGTCGTTTCCCTCGCCGTCTCTCGCTGTGTCGGAGAACTACGCCGGCGGACCCTTCCGCACCAACGTCCGCTCCTTCCTCACCAAGCACGCACTGCTCCCGCCACCGTCGGCGCTGTTTCCGCACCTGCTGACGTGGCAGATCCTCTTCCGCATCGGCGAGCTCACCGACAGCCCCGAATCGGGACCGCCGGTGGTGTGCCTCGACGTCGTGGAGGAGGACGTGGCCAGATCTAGATCCATTTACTGCGATCAGTGCCGAGTTTTCGGGTGGAGCGGCCACCCCGTGTGCGGGAAACGTTACCATTTTATTATCAAAGCCGATGGGAGCTCTATTGGTGGGTATCACAAGCCATGTATGTGCTGTGGGGACATCTTGCATTTGTCAGAATCAAAATGCAAGTCTTGCAACCATGTGACTACCACTGATGATGTTGAAGACTGGGTGTATAACCAATTAGAGAACACGACTCATCTTTTGCATGGCGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGAGTTAATGGCAAAGAAGGGGGCTCTAGATTTCTTTCTGGTTGTCATATTATGGATTTTTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGCGTAATGGATGTTTCAAAGAAATATGGGCTAGAGTACCGCTTGCTCCATGCGATTATGAAGGGACATCCGTGGTATGGTGACTGGGGTTATAAATTTGGATCTGGTAGCTATTGTCTCACATATGAAGCGTACAAGTCTGCTATTGAAAGCCTATCCAATCTACCCTTGTCCACCTTCTTTTCCCCGGGACAAATGCCCCACTCTCGTGTGCAGGACATGATCTCATATTACCAGTCTTTGTCAGAGCATGAACTTGTAAATATAAGGGACCTCTTTTGTTTTTTGATGAGTTTGATTGACGATGCCCGCAAGAATGCATCAAATGTTGATGACAAAACCTTCAAGAAGCGTCGTTTTAATGCTTCTGGGGATAGTTCTTGGGAGAAGAGTGACGTTGAATATGTGGAGGAAGCCATGCTCAGAGTACTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGTGTGCAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGGAAAACTGGGAGGGAAGGTGGTCTATGGTGGAATGGTTGTTAATAGTCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGGCTCGAGGGTGCAAGCAGTTCTTGCTATGGAATTTTAACAAACAATAACGCTTCAGGCTCAAAGTATCCATCTGAAGAGAACCTCCTTCAATGCTTGAGATACTTATATGATTCTCTGCTTCAACCTCAAACGATGCTAACCTATGTTGAAGAAGGGAAAAGAACTCTTGCAATGAGCTCAGCTCAAAAGCTTCTTGACTGCAAGCAGTTTGTGAAAGATTATAGTCCTGAGATGTTGCCAATGTCAGATTTGGATAAGTTACGCATCTCGTGTCAGGTTGAACTTATAGATGAATCTGAAGATTCTGCAGCTAGAACTCCGCCAGAATTAATAGTGTTGCCTATGAATGCCATGGTGGCTGACCTTAAGTTTGAAGCTGCAAATGCTTTTCAAGATGTTTATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTACTTGACTATAGAGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGCGGTTTGTGTCCGTGGAAGATGCATTGGGAAGAACGGATTGAATAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACAGTAGATTGCAGCTGTGGGGCTAAGGACGATGATGGAGAGAGAATGTTGGCTTGTGACATATGTGGGGTGTGGCGGCACACTAGGTGTTCTGGCATCCATGATGCTGATCCTGTTCCAGCACGTTTTGTTTGCCCGAGATGCCAAAACTGTGAATCTAAACCTAAATCTAGTGGGCTCTGCAAAGACGAGACTGTGAGTGTCGTTAGTACTAGTGTAGCAGTTGCTTCGGAAACGGCTCGCAAGTGCCATCCAATGTTCATTAAGTCATACGATTAG 2148 0.4735 MVVSGGKPLKRMKRRVTADFYDFLSFPSPSLAVSENYAGGPFRTNVRSFLTKHALLPPPSALFPHLLTWQILFRIGELTDSPESGPPVVCLDVVEEDVARSRSIYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGKEGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTYEAYKSAIESLSNLPLSTFFSPGQMPHSRVQDMISYYQSLSEHELVNIRDLFCFLMSLIDDARKNASNVDDKTFKKRRFNASGDSSWEKSDVEYVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGKLGGKVVYGGMVVNSRCNPQTGVYEFRLEGASSSCYGILTNNNASGSKYPSEENLLQCLRYLYDSLLQPQTMLTYVEEGKRTLAMSSAQKLLDCKQFVKDYSPEMLPMSDLDKLRISCQVELIDESEDSAARTPPELIVLPMNAMVADLKFEAANAFQDVYLMFRRFQVDELLDYRGVDDSTQVKLLLGSKDAVCVRGRCIGKNGLNKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPARFVCPRCQNCESKPKSSGLCKDETVSVVSTSVAVASETARKCHPMFIKSYD* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1640 715 Pfam PHD-finger 627 674 IPR019787 -
Apr8g1640 715 CDD PHD_MMD1_like 626 671 - -
Apr8g1640 715 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Apr8g1640 715 PANTHER OS01G0877500 PROTEIN 1 680 - -
Apr8g1640 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Apr8g1640 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 678 IPR013083 -
Apr8g1640 715 SMART PHD_3 626 672 IPR001965 -
Apr8g1640 715 SUPERFAMILY FYVE/PHD zinc finger 621 678 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1640 Apr-Chr8 26526013 26532061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1640 77 671 PHD Transcription Factor Family AT5G22260 30.463 5.56e-83 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr8g1640 PHD 1.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1640 - - gmx:100818189 1208.36