Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1638 ATGGAGTCTAGCAATTTTCATGTTGATAGAAGGGCGGAGAAAATGATAATAATAAGATACAAGGAATGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAATCGATGGGTGTGGTGAGTTCATGCCTGGTGGAGAAGAAGGCACACTGGAGGCTCTCAAGTGTTCAGCTTGCAGCTGCCACAGAAACTTTCACAGAAAAGAGATAGAGTCTGATTCTAATTCCACTCCTTTGATTCCTGATACTACTCAGATAAGGCCCATTTTGGCGCATTTATGTGCCAACAAAAGTGGCTCCGTTAGTCCTTCTGATCAGTCTGAAGAGAAGGACTATGAAGATGGGATCAATAAGGAGCTGGAAATTCCAACTGAAAAGGTGAAGAAGAGGTTCAGAACCAAGTTCACACAAGAACAGAAGGAGAAGATGTTGGGTTTTGCAGAAAGGGCAGGGTGGAGGATACAGAAGCTAGAGGAATCTGTAGTGCACAAGTTTTGCCAAGAGATTGGAATCAAGAGAAGAGTGCTCAAAGTGTGGATGCACAATAACAAGAACACTTTTGCCAAGAGAAGTCTCTCAACTAGCTAG 588 0.4354 MESSNFHVDRRAEKMIIIRYKECLKNHAAAIGGNAIDGCGEFMPGGEEGTLEALKCSACSCHRNFHRKEIESDSNSTPLIPDTTQIRPILAHLCANKSGSVSPSDQSEEKDYEDGINKELEIPTEKVKKRFRTKFTQEQKEKMLGFAERAGWRIQKLEESVVHKFCQEIGIKRRVLKVWMHNNKNTFAKRSLSTS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1638 195 Gene3D - 117 189 - -
Apr8g1638 195 SUPERFAMILY Homeodomain-like 126 189 IPR009057 -
Apr8g1638 195 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Apr8g1638 195 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 190 - -
Apr8g1638 195 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 13 190 - -
Apr8g1638 195 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Apr8g1638 195 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Apr8g1638 195 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 128 185 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1638 Apr-Chr8 26493438 26494025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1638 14 191 ZF-HD Transcription Factor Family AT1G14440 52.525 1.05e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr8g1638 ZF-HD_dimer 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1638 - - gmx:100793926 323.168