Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1602 ATGATGGGGACAGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGAAGAGGGTAGAAGACAATGAAAACCAAAATGATAAAAATATGACCAGTTGTTCAGCCTCAACAAGTGCTTCTGAATCACAATCAACTAAGGTGGAAAATGATGTTCAAGTTCATGATACTGCAAAGGTTCCTAGATCCCTACGACGAAGACCCTGGATTAACTATGGACAATATGAGAACAGTTCTGATGACGACTCTGACCGTGAGCGGCTTGATCAAAATTTTGTCTCAAGATCTTGTCTTCCTAAGGGTGTCATCCGTGGATGTCCAGATTGCAGTAATTGTCAAAAGGTTGTTGCTAGATGGCGACCAGAAGATGCTTGTAGGCCAAATCTTGAGGATGCTCCTGTTTTCTATCCTACTGAAGAGGAGTTTCAAGATACTTTAAAATATATATCAAGCATTCGCACGAGGGCTGAACCATATGGAATTTGTCGCATTGTTCCGCCATCTTCCTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGCATATGGGAGGGTTCTAAATTTGCTACACGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAGGGAGAAAGATGTCAAGGATTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATGGCACTAGAATGGGACCTAGTGCTGGATTTTGTGAAACTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAAATATGCAAATGATTTTAAGGGAAAATACTTCAGAAAAAATGAGAGTGTAGCTCATTTGGGTGTGAATACAACAATTTTAAATGATACCACAGAGCCTTCTGTGGAAAAAATTGAAGGTGAATATTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTCCCCAATAAGTCTTGTCAAGTTGGTTGTGCTTCACAAGAACAGTACATAACATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTCTGCTCTCCTATGAAAGCAGTGATATATCTGGCGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTAAATTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGTGTCCCTGGAAAGGATGCCTGCAAATTAGAAGAGGCCATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAACCTGACTTGCTTCATAAGTTGGTCACTCAGCTTTCTCCTTCTATCCTGAGGTCTAAAGGAGTACCAGTTTATAGGTGTGTTCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGATTCAATTGTGGTTTCAACTGTGCTGAGGCTGTTAATGTTGCTCCTGTTGACTGGTTGCCCCATGGGCATATTGCAATAGCGCTATACCAGGAGCAGGGGCGCAAGACTTCTATATCTCATGATAAGCTGTTACTTGGGGCTGCAAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTAAAGAAGAATACCTCAGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCCTTTTGGCAAAAGCACTCAAGACACGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTTTCTGCAGTTCTTCACAGTCATTAAAAATGGAGAGTAGTTTTGATGCTACAAATGAAAGGGAATGCAACATTTGCTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCCCCTGATAGATATGCTTGCTTGGATCATGCAAAGCACTTTTGTTCATGCTCTTGGGATTCCAGATTTTTCCTCTTCCGTTATGATATTAGCGAACTAAGTATTCTTGTTGAGGCCTTGGAAGGAAAATTAAGTGCAATATACAGATGGGCAAAATCAGATCTTGGGCTGGCACTCTCTGCTTATGTCTCAGCAGACAAGGAAACAATACTAAAGGAATTGAAATTGCATTCATCCAATTTGTCTCATTCTTCCAGGGCTACTGTGCATAAAGAGATGGCTTTGCATCCATCAAATAAATTTATTGACGATTCTCAATTGATTGATGTACCAATAGAGAATCAAGCAAATTCAGTAAATAGCAAAGATCAGAGTTATTTTCAACAGAGGAAATCAACTGAAGCTACTTCATCTTTGAGTTCCATTAAGGAGTTGACATTAAAAAGCTCAAAACCTACATGTGAGATGGCTACGCATAAGATCTGTGTCAAAGAAGAACCCGTTATTTGCAGATCAAAGCTAAGAACCTCTAGTTGTCAACTGTCTCAAGAGGATTCATCATATGCTTTATCTCTGCCCCTCTCTCAACATGGAGGTGAGAAAAATTCACTTTACAGGCATAATAACAATATTATACTTCTTAGTGATGATGAAGATGATGAAAAGAAGTTGTCAGATTCAAATAGAAAGAAGGAATTTTCTTCTATGCTTGCAGGTTCTAGAGATAAAGCAAACTCATGTAACAACCAAGACAAGGGTGCTATTACATTGGCCCATGAAAATATGAGTTCTGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACACAGGGGACCAGTTCTAGCTTCTACCCCAGTAGATCTTTCTTGTCGTATAGGTCTTACCAGTGCGGAATCAGCTAGAAACACTCCAGCTTCTTCAACAGTGGAGACCAATGATCATTGCTTGGAAAGTTTAGACATTTGTCCTCTGAACCCACAACATTCTGGAACTATCAAGGCTAGGAATGAGGATAGTCATGAAAAGTTTGGAGGATGTGCTCCTAATGTAGCAGATAATGCAAAAGCCCTTAATGGGAACCTTTCTTGCAGTCCAAACAATTACCGCCAGAAAGGTCCTCGCATTGCAAAGGTTGTTCGGCGTATCAACTGCAATGTTGAACCATTAGAATTTGGAGTGGTGCTTTCTGGAAAGTCATGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCTAGCATGTGTTACTATATTTCAGAAATTCTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCCTGGAAAATTGTTCAAGCGAGGTCTTCATTCATATGTCAGCTGCAAGATGCTGGGAACTTGTGAGAGAGAGAGTGAATCAAGAGATCACAAAGCACCATAAGATGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTTGATTGTAGTCGAGTATGTAATGAATATTGGGACTCCCGTCCCTATTCCCGTCCTCAAGGGCAGATTTCACAAGCTTGCCACACCAATGTAAATGGTGGAAATGGTCAAGGGATTCACATGAATCAGCACATACCCGTTGGAGCTGTTGAAGTACTGAGGAGCCTATTCAAAAAGGTCAATGGAGAAGAATTGAACTTACTGTACAGCATTCTTAGTGACAATAAGCCAGCGGCTGACCGTATCCTAATTGCGAAACTTATCAATGAAGAGATTCACAAATCACAACCGCCCTAG 3735 0.4107 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVEDNENQNDKNMTSCSASTSASESQSTKVENDVQVHDTAKVPRSLRRRPWINYGQYENSSDDDSDRERLDQNFVSRSCLPKGVIRGCPDCSNCQKVVARWRPEDACRPNLEDAPVFYPTEEEFQDTLKYISSIRTRAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRDSGRKMSRIQSNMKRKRRRCTRMGVDNGTRMGPSAGFCETERFGFEPGPEFTLETFQKYANDFKGKYFRKNESVAHLGVNTTILNDTTEPSVEKIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPNKSCQVGCASQEQYITSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILRSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIALYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNLRWKDVCGKDGLLAKALKTRVEMERARREFFCSSSQSLKMESSFDATNERECNICFFDLHLSAAGCRCSPDRYACLDHAKHFCSCSWDSRFFLFRYDISELSILVEALEGKLSAIYRWAKSDLGLALSAYVSADKETILKELKLHSSNLSHSSRATVHKEMALHPSNKFIDDSQLIDVPIENQANSVNSKDQSYFQQRKSTEATSSLSSIKELTLKSSKPTCEMATHKICVKEEPVICRSKLRTSSCQLSQEDSSYALSLPLSQHGGEKNSLYRHNNNIILLSDDEDDEKKLSDSNRKKEFSSMLAGSRDKANSCNNQDKGAITLAHENMSSDSTQLLHVKQECHEHRGPVLASTPVDLSCRIGLTSAESARNTPASSTVETNDHCLESLDICPLNPQHSGTIKARNEDSHEKFGGCAPNVADNAKALNGNLSCSPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSSMCYYISEILDAGRGWPLFMVSLENCSSEVFIHMSAARCWELVRERVNQEITKHHKMGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDCSRVCNEYWDSRPYSRPQGQISQACHTNVNGGNGQGIHMNQHIPVGAVEVLRSLFKKVNGEELNLLYSILSDNKPAADRILIAKLINEEIHKSQPP* 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1602 1244 Pfam C5HC2 zinc finger 613 663 IPR004198 -
Apr8g1602 1244 MobiDBLite consensus disorder prediction 35 75 - -
Apr8g1602 1244 Gene3D Cupin 133 507 - -
Apr8g1602 1244 ProSiteProfiles JmjC domain profile. 360 523 IPR003347 -
Apr8g1602 1244 SMART cupin_9 360 523 IPR003347 -
Apr8g1602 1244 SMART fyrc_3 1074 1168 IPR003889 GO:0005634
Apr8g1602 1244 Pfam JmjC domain, hydroxylase 390 506 IPR003347 -
Apr8g1602 1244 Pfam F/Y rich C-terminus 1073 1156 IPR003889 GO:0005634
Apr8g1602 1244 PANTHER JUMONJI 14-RELATED 837 1241 - -
Apr8g1602 1244 PANTHER JUMONJI 14-RELATED 73 739 - -
Apr8g1602 1244 PANTHER LYSINE-SPECIFIC DEMETHYLASE 837 1241 - -
Apr8g1602 1244 PANTHER LYSINE-SPECIFIC DEMETHYLASE 73 739 - -
Apr8g1602 1244 MobiDBLite consensus disorder prediction 847 878 - -
Apr8g1602 1244 SUPERFAMILY Clavaminate synthase-like 364 550 - -
Apr8g1602 1244 ProSiteProfiles FYR domain FYRC motif profile. 1070 1160 IPR003889 GO:0005634
Apr8g1602 1244 MobiDBLite consensus disorder prediction 43 67 - -
Apr8g1602 1244 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Apr8g1602 1244 ProSiteProfiles FYR domain FYRN motif profile. 1010 1068 IPR003888 GO:0005634
Apr8g1602 1244 Pfam F/Y-rich N-terminus 1023 1065 IPR003888 GO:0005634
Apr8g1602 1244 Gene3D - 1017 1154 - -
Apr8g1602 1244 MobiDBLite consensus disorder prediction 860 878 - -
Apr8g1602 1244 SMART fyrn_3 1024 1068 IPR003888 GO:0005634
Apr8g1602 1244 Pfam jmjN domain 149 182 IPR003349 -
Apr8g1602 1244 SMART JmjN_1 147 188 IPR003349 -
Apr8g1602 1244 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1602 Apr-Chr8 25957085 25967558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1602 2 1239 JUMONJI Transcription Factor Family AT1G08620 56.206 0.0 1264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr8g1602 JmjC 3.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1602 - - gmx:100800271 2155.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1602 8 25957085 25967558 Apr8g1602 8 25957085 25967558 ECH