Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1597 ATGGCGTCAATGAACTGGTTGGATTTTTCGCTCTCCCCTCAAGAACTTCCACCACAACCTCCTAGTAATGAAGATCGCTCTCAAACGATGACCCCTCACCACGCCTTCAACTCTCACGGAATCTCAGCCTCTGATGTTTCTGCCCAATGCTTTGATCTCACTTCACACTCCACTACTCATCACTCTCTCAACCTCCCTCCTTTTGGCTTGTTTGAAGACAACACTCATCATACCCCTCTAGATTGGAACACAAAGGGTTTGGGAAGCAACACGGAGGATAACTACAACAGCCAAAACTTGCTATTGGGCACTTCCACTTCATGCAGCAGTGACCGAAACGTAGACAGCAACCAACAACACCCAAAACTCGAAAACTTTCTCGGTCAACACTCTTTGGGCGAACACGACTTTATGTTCCCAAACTCTTCACTTAAACTTCCTCCTCAGCCGTCGGAAAAACCGGCAACCTGCGGTGACGGTAGTCCCAAAAATAGTAGCTCTATTGGGTTGTCTATGATAAAGACATGGCTGAGGAACCAAACGACAGAATCAGATTCTGTTCCTGCGGCAAACACATCCCTTTCCATGAGTACTACAGTGTCACAGTCAAGCACGTTAGCATTGCCCCTTCTAACGGCAAGTGTGGATGGAGAGAGTTCCTCTTCGGATAGTAAGCAACAGCAAGATAATAACCAAACCGTAGCTATTGTTGAGAATGTGCCTAGAAAATCTGTTGACACATTTGGACAGAGAACATCTATATACCGTGGTGTAACCAGGCATAGGTGGACGGGTAGATATGAAGCTCATTTGTGGGACAATAGTTGTAGAAGAGAGGGGCAAACTCGCAAAGGAAAGCAAGTTTACTTGGGAGGTTATGATAAAGAAGAAAAGGCAGCTAGAGCTTATGATTTGGCAGCACTGAAATACTGGGGAACGACAACAACAACAAATTTTCCAATTAGCCAATATGAAAAGGAGTTAGAAGAAATGAAGCACATGACAAGGCAAGAGTACGTCGCGTCACTGAGAAGGAAGAGCAGTGGATTCTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGGTGGCAAGCTAGGATTGGAAGAGTTGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACACAAGAAGAGGCGGCAGAGGCATATGATATTGCAGCCATCAAATTCCGAGGACTGAAGGCAGTTACAAACTTCGACATGAGCAGATACGACGTTAGGAGCATCCTTGAGAGCAGCAATTTACCCATTGGTGGCGCTGCCAAACGTTTGAAGGATGTTGACCAGGTCGATCTCACCATCATACGTGCACAAACCTCAAACGTAGATTCCAACATTAATATTTATGGTGCAACACACCATGCTTGGCCTGCATCTCTTGCATTCCTCCAATCTCAACCATATACTAGCCATTTGAATTGCACATATGGACACAAACTTTGGTGCAAGCAAGAACAAGATTCCGATGTTCCTCAAACTTTTCATGATATTCATCAACTCCAATTAGGGAACACCCACAATTTCTTTCAGTCCAATGTCATGAGCATTGATTCTGCTTCTGTCGATAATAATAGCTCTGCTGCATCTAACTCTATCGTTTATGGGGATGGTTACGCGATTCCCATGGCTACTTCTACGTTCATTCAAGAAGATGATGTTAATCAAAATAATAGAAGCAGTGGTTTTGGAGATAATGATGTGAAGACGTTTGGTTACGAAAATGTGTTCACATCTATCAGTACAACCGATCCTTATCATGCAAGGAACTTGTGTTTTCTTTCGCACCAAACATCTGCAGATAAGGGTAGTGCATATGAAGCATGCAATAGCTGGGTGCCAACTACGATTCCAACACTTTCACCAAGGACTACCAATATGGCTCTCGTTCCCGGAGCTTCGTCGTTCACATTGTTGAACGAATAG 1965 0.4448 MASMNWLDFSLSPQELPPQPPSNEDRSQTMTPHHAFNSHGISASDVSAQCFDLTSHSTTHHSLNLPPFGLFEDNTHHTPLDWNTKGLGSNTEDNYNSQNLLLGTSTSCSSDRNVDSNQQHPKLENFLGQHSLGEHDFMFPNSSLKLPPQPSEKPATCGDGSPKNSSSIGLSMIKTWLRNQTTESDSVPAANTSLSMSTTVSQSSTLALPLLTASVDGESSSSDSKQQQDNNQTVAIVENVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGKQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMSRYDVRSILESSNLPIGGAAKRLKDVDQVDLTIIRAQTSNVDSNINIYGATHHAWPASLAFLQSQPYTSHLNCTYGHKLWCKQEQDSDVPQTFHDIHQLQLGNTHNFFQSNVMSIDSASVDNNSSAASNSIVYGDGYAIPMATSTFIQEDDVNQNNRSSGFGDNDVKTFGYENVFTSISTTDPYHARNLCFLSHQTSADKGSAYEACNSWVPTTIPTLSPRTTNMALVPGASSFTLLNE* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1597 654 PANTHER BNAC02G44180D PROTEIN 5 579 - -
Apr8g1597 654 SUPERFAMILY DNA-binding domain 253 322 IPR016177 GO:0003677
Apr8g1597 654 CDD AP2 253 322 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 Pfam AP2 domain 254 312 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 Pfam AP2 domain 356 406 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 MobiDBLite consensus disorder prediction 21 39 - -
Apr8g1597 654 PRINTS Ethylene responsive element binding protein signature 255 266 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 PRINTS Ethylene responsive element binding protein signature 396 416 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 Gene3D AP2/ERF domain 254 322 IPR036955 GO:0003700|GO:0006355
Apr8g1597 654 Gene3D AP2/ERF domain 356 416 IPR036955 GO:0003700|GO:0006355
Apr8g1597 654 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 579 - -
Apr8g1597 654 ProSiteProfiles AP2/ERF domain profile. 254 320 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 MobiDBLite consensus disorder prediction 137 165 - -
Apr8g1597 654 SUPERFAMILY DNA-binding domain 355 416 IPR016177 GO:0003677
Apr8g1597 654 SMART rav1_2 254 326 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 SMART rav1_2 356 420 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 CDD AP2 355 416 IPR001471 GO:0003700|GO:0006355
Apr8g1597 654 MobiDBLite consensus disorder prediction 1 39 - -
Apr8g1597 654 ProSiteProfiles AP2/ERF domain profile. 356 414 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1597 Apr-Chr8 25898492 25903079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1597 121 560 AP2-EREBP Transcription Factor Family AT5G17430 52.980 1.81e-142 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Apr8g1597 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1597 K09285 - qsu:111984882 757.673