Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1592 ATGGAATTCCACGCCGCAATTCCCATATCCCAACCACCCCTAACTCAACCTCAAGGTTCAATGTGGATGATGAAATTGAGGCCAAGTGAAACAATGGAATCTGGACCGTATCCAGAGCGCCCAGGGGAGCCAGATTGTTCATATTATATCAGAACAGGCCTTTGTAGATTTGGTGCAACTTGTCGATTTAATCATCCTCCTAACCGGAAGCTGGCTATTGCCACTGCAAGGATGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGTCACATGCAAATTTCATCATCCTAGAGATCAGGCTGGGGTTGCAGGAAGAGCTGCCTTAAATATTTTAGGCTATCCACTCCGCCTTAATGAACCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAGTTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTACGGGGTCAGCAGTCATATACTGGAGGAATTACAAATTGGTCGAGAGCATCTTATATTCCTAGTCCTCGGTGGCAAGGTCCTTCGAGTTATACACCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCCTACAGTAGTCAAATAGGGGCAATCTCTACGTCAGACAGTTCACAGCAAACAATGGGAAATAATCAAACACATGGAACTTCTCACCAAGGTGAACTAGCCAGTGCAGGATCACATGGGGCATATTCTCAATTCCGTTCTGCCACAGTTCCTGTAGGGTTTTATGCATTGCAGAGGGATAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCTGTCTGTCGGTTTCACCACCCACGTGAGAGGCTAATTCCTGCTCCTGATTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGACCTGGAGAGCCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAACGAGACTTTTTACCTATAATATCTCAGCATCGCCTTCAGCTGATGCCCCAAGCAGGCATCTTTTAGGATCTTCATCAGGAACTGCAGAATTAAATTTATCATCTGAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCCAGGAGGCTTTCATTATCAGAGACAAGACAGATTCCTTCTGGTGATGATGACATTGATGATGATGGATGA 1257 0.4503 MEFHAAIPISQPPLTQPQGSMWMMKLRPSETMESGPYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMIGEFPERIGQPECQYYLKTGTCKFGVTCKFHHPRDQAGVAGRAALNILGYPLRLNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGQQSYTGGITNWSRASYIPSPRWQGPSSYTPLILPQGVVSVPGWSAYSSQIGAISTSDSSQQTMGNNQTHGTSHQGELASAGSHGAYSQFRSATVPVGFYALQRDNIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPTRLFTYNISASPSADAPSRHLLGSSSGTAELNLSSEGLVESSSAKPRRLSLSETRQIPSGDDDIDDDG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1592 418 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Apr8g1592 418 Gene3D - 116 167 - -
Apr8g1592 418 MobiDBLite consensus disorder prediction 383 407 - -
Apr8g1592 418 MobiDBLite consensus disorder prediction 223 245 - -
Apr8g1592 418 Gene3D - 39 115 - -
Apr8g1592 418 Gene3D - 277 361 - -
Apr8g1592 418 SMART c3hfinal6 40 67 IPR000571 GO:0046872
Apr8g1592 418 SMART c3hfinal6 324 351 IPR000571 GO:0046872
Apr8g1592 418 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Apr8g1592 418 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Apr8g1592 418 SMART c3hfinal6 85 112 IPR000571 GO:0046872
Apr8g1592 418 SUPERFAMILY CCCH zinc finger 45 68 IPR036855 GO:0046872
Apr8g1592 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 15 417 - -
Apr8g1592 418 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Apr8g1592 418 SUPERFAMILY CCCH zinc finger 132 159 IPR036855 GO:0046872
Apr8g1592 418 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
Apr8g1592 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Apr8g1592 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 350 IPR000571 GO:0046872
Apr8g1592 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
Apr8g1592 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 67 IPR000571 GO:0046872
Apr8g1592 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Apr8g1592 418 MobiDBLite consensus disorder prediction 383 418 - -
Apr8g1592 418 SUPERFAMILY CCCH zinc finger 327 351 IPR036855 GO:0046872
Apr8g1592 418 PANTHER PROTEIN PHOSPHATASE RELATED 15 417 - -
Apr8g1592 418 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872
Apr8g1592 418 ProSiteProfiles Zinc finger C3H1-type profile. 85 113 IPR000571 GO:0046872
Apr8g1592 418 SUPERFAMILY CCCH zinc finger 282 308 IPR036855 GO:0046872
Apr8g1592 418 ProSiteProfiles Zinc finger C3H1-type profile. 40 68 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1592 Apr-Chr8 25809864 25815641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1592 21 417 C2H2 Transcription Factor Family AT3G02830 62.562 2.66e-180 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr8g1592 zf-CCCH 7.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1592 - - gmx:100790771 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1592 8 25809864 25815641 Apr8g1592 8 25809864 25815641 ECH