Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1580 ATGGGCGCCGAGGACAACAGAACAAGATTGAAGGCGAAGTTGCGGGAATTGATGAATAGCATCGTGGAGGACGATGGCACCTCACTATTAGCCTTCGACGATGCAATCCAAGCTCTTAAGACTCTCAAGGATTTTAAGTACTCCTCCATCTTGGGCAACTTGACTGTTCCCCCAGAGTTTCAATGTTCCCTCTCTGGTCGCTTAATCACAGATCCTGTTTTCTTGATCAACAATGAGACTTATGATCGGAAATCGATTGAGAAGTGGACGGATGATGTGAACAGACTTTTCGATCAGACAAAGCGAATCATTTCTGACTGTACCCTTGCTCCCAACAATTCAGCCCAATGCTTGATTTCGAAGTGGTGTGAAGAGAATGGAGTTGCGATAGAAGACAGTGATTATGCAAAACTAACTGAAGACCACAAGCACCGCTTGCATTCTTCGCTTTACCAGTTGTCACTCTCTGAACCTCAACAGTTAAAAGCTGCAAAAGAGCTTCGCCAGCTAACAGAGCGAGTCCCACCATTTCGAGAACTCTTTGGGAACGAAGAAGTGATTCATCTCTTGCTCAGTCCATTATCAGGTGGCATTCATTGTGTTCACCCTCAAATCCACGAGGACTTGGTCACAACCGTTCTAAATGCTTCAATTCTTGAAGACAACAGAAAAATATTTGTAAAGGATAAGAAGATCACTTCCTTGCTCACTGATTCAGTGAGATCAGGAAGCATCAGAGCAAGAAGCAATGCAGCTTTTACCATTTTCTTGTTGTCATCCGATCAACCCAATAGGCTCATGTTTGGAACATCTGACGCTTTGGACCATTTGGTGCGGCTGTTAGATAGTGAAAATGAATCAGCATCAAAAAATGCTGCTTCGGCTTTATTCAACCTATGTTTGGAAGATGTAGTTAAAGAGTGGAGTGTAGAAGAAGGGATAGTGGAAATTATTATTGACAAGATCATAAACAACATCCAAGTTAAACAGATGATGTCTCTACTTGCACTTCTCGCTGGCCATTTAAGTGCTGTTGATGCATTGGTTGGTAATGAGGCTGTTCCCTTATTACTCGATCTGTTAAGGGAGAACCCGGGGTCACTCATCAAGGAATACTCTATTTCAATTCTCCATAGCATCTGTAAACACCATCCTTTAAAGTTGCTAGAAATTAATGCCGAGGAAGAAGAACACCATTCACTCTCTAATCTTGCAGTGTCTGGGACTCCAAGGGCCAAGACGATAGCCAACATTGTTCTTGACCTGCTCAAATTTGTCCGCTAG 1284 0.4299 MGAEDNRTRLKAKLRELMNSIVEDDGTSLLAFDDAIQALKTLKDFKYSSILGNLTVPPEFQCSLSGRLITDPVFLINNETYDRKSIEKWTDDVNRLFDQTKRIISDCTLAPNNSAQCLISKWCEENGVAIEDSDYAKLTEDHKHRLHSSLYQLSLSEPQQLKAAKELRQLTERVPPFRELFGNEEVIHLLLSPLSGGIHCVHPQIHEDLVTTVLNASILEDNRKIFVKDKKITSLLTDSVRSGSIRARSNAAFTIFLLSSDQPNRLMFGTSDALDHLVRLLDSENESASKNAASALFNLCLEDVVKEWSVEEGIVEIIIDKIINNIQVKQMMSLLALLAGHLSAVDALVGNEAVPLLLDLLRENPGSLIKEYSISILHSICKHHPLKLLEINAEEEEHHSLSNLAVSGTPRAKTIANIVLDLLKFVR* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1580 427 SMART arm_5 261 301 IPR000225 GO:0005515
Apr8g1580 427 SMART arm_5 341 382 IPR000225 GO:0005515
Apr8g1580 427 Gene3D - 145 423 IPR011989 -
Apr8g1580 427 Pfam U-box domain 56 126 IPR003613 GO:0004842|GO:0016567
Apr8g1580 427 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 299 IPR000225 GO:0005515
Apr8g1580 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 424 - -
Apr8g1580 427 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Apr8g1580 427 PANTHER U BOX DOMAIN-CONTAINING 6 424 - -
Apr8g1580 427 Pfam Armadillo/beta-catenin-like repeat 262 300 IPR000225 GO:0005515
Apr8g1580 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 131 IPR013083 -
Apr8g1580 427 SUPERFAMILY RING/U-box 54 130 - -
Apr8g1580 427 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Apr8g1580 427 SUPERFAMILY ARM repeat 156 407 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1580 Apr-Chr8 25665407 25667055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1580 118 424 U-box Gene Family AT3G07360 36.991 1.77e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1580 - - aprc:113871666 629.402