Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1579 ATGGGGAGCGAGGACAACAGAAAAAGATTGCAGGCGAAGTTGCGGCAATTGATGAGTAGCATTGTGGAGGACGATGACACCTCGCTATTAGCCTTCGACGATGCAATCCAAGCTCTTAATACTCTCAAGGATTTTAAATACTCTTTAAACTTTGGCAACTTAACTGTTCCCCCAGAGTTAAGATGTTCCCTCTCTGGTCGCTTCATCACGGATCCTATTTTCTTGACCAACAAAGAGACTTATGATCGGAAATCGATTGAGAAGTGGATGGATGATGTGAACAGACTTTGCGATCAGACAAAGCGAATCCTTTCGGACTGTGCTCATACTCCCAACAATTCAGCCCAATGCTTGATTTCAAAGTGGTGTGAAGAGAATGGAGTTGTGTTAGACGACAGGGATTATGCAAAACTAACTGAAGACCACAAGCACCGCTTGCATTCTTCGCTTTACCAGTTGTCACTCTCTGAACCTCAACAGTTAAAAGCTGCAAAAGAGCTTCGCCAGCTAACAGCGCGAATCCCACCATTTCGAGAACTTTTAGGGAACGAAGAAGTGATTCATCTCTTGCTCAGTCCATTATCAGGTGGCATTCATGGTGTTCATCCTCAAATCCACGAGGACTTGGTTACAACCGTTCTAAATGCTTCAATTCTTGAAGACAATAGAAAAATATTTGGAAAGGATGAGAAGATCATTTCCTTGCTCATTGATTCTGTGAGATCAGGAACCATCGAAGCAAGAAGCAATGCAGCTTCAACCATTTTCTTGCTGTCATCCATTCAAACCAATAGGCTCATCTTTGGATCATGTGACGCTTTGAAACATTTGGTGGAGCTGTTAGGTGAGGAAAATGAATCAGCAATGAAAGCTGCAGCTTCGGCTTTATCGAACCTATGTTTGGAAGATGTAGTTAAAGAGTGGAGTGTAGAAGAAGGGATAGTGGATGTTATTATTGACAAGATCACAGACAACATCCAAGTCAAACAGATGATGTCTCTACTTGCACTTCTCGCTGACCATTTAAGTGCTGTTCAGGCACTGGCTGATAATGATGCTGTTACCTTACTTCTCGGTGTGATAAGGGACAACACGGGGCCAAGCATCAAGGAATACTCTATTTCGATTCTCTATAAGATCTGTCAAGTGTATAATATAAAATTGCTAGATATTAATGACGAGGAAGAAGCATACCGTTCACTCTCTAATCTTGCAGAAACTGGGACTCCAAGGGCGAAGAGGATAGCCAACATTGTTCTTGACCTGCTCAAATTACGCCCCTAG 1284 0.426 MGSEDNRKRLQAKLRQLMSSIVEDDDTSLLAFDDAIQALNTLKDFKYSLNFGNLTVPPELRCSLSGRFITDPIFLTNKETYDRKSIEKWMDDVNRLCDQTKRILSDCAHTPNNSAQCLISKWCEENGVVLDDRDYAKLTEDHKHRLHSSLYQLSLSEPQQLKAAKELRQLTARIPPFRELLGNEEVIHLLLSPLSGGIHGVHPQIHEDLVTTVLNASILEDNRKIFGKDEKIISLLIDSVRSGTIEARSNAASTIFLLSSIQTNRLIFGSCDALKHLVELLGEENESAMKAAASALSNLCLEDVVKEWSVEEGIVDVIIDKITDNIQVKQMMSLLALLADHLSAVQALADNDAVTLLLGVIRDNTGPSIKEYSISILYKICQVYNIKLLDINDEEEAYRSLSNLAETGTPRAKRIANIVLDLLKLRP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1579 427 PANTHER U BOX DOMAIN-CONTAINING 7 424 - -
Apr8g1579 427 SUPERFAMILY ARM repeat 156 419 IPR016024 -
Apr8g1579 427 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Apr8g1579 427 Pfam U-box domain 56 126 IPR003613 GO:0004842|GO:0016567
Apr8g1579 427 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Apr8g1579 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 7 424 - -
Apr8g1579 427 SUPERFAMILY RING/U-box 47 130 - -
Apr8g1579 427 Pfam Armadillo/beta-catenin-like repeat 270 300 IPR000225 GO:0005515
Apr8g1579 427 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 272 299 IPR000225 GO:0005515
Apr8g1579 427 Gene3D - 154 424 IPR011989 -
Apr8g1579 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1579 Apr-Chr8 25647855 25649766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1579 118 424 U-box Gene Family AT3G07360 37.304 6.41e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1579 - - aprc:113871666 824.698