Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1560 ATGTGTGAAGCCCTTAAAACGCAGTACCAAGTTTGCGAAGAGGAAGAGATCGGTCGCGGTCGCTTCGGCACCATCTACCGCTGCTTCCACCCAAACTCGAACGAACCCTTCGCTTGCAAACTCATCCACAAGTCCCTTCTCTCCGATTCCACCGATCGTCAGTGCCTTCAGAACGAACCCAAATACCTCTCTCTTCTCTCTCCTCACCCCAACGTCCTCCAAATCTTCGATTTCTTCGAGGACGACCACAACCTCGCCATCGTCGTTGAGCTTTGCCAACCCCTCACACTCTTCGACCGCATCGTCGCTCACAATCCATTACCCGAACCCCAAGCCGCTTCCCTCGTCAAACACCTCCTCCTCGCCGTCGCCCACTGCCACCGCCTTGGCGTCGCGCACCGCGACATCAAGCCCGACAACATTCTCTTCGATTCCAACGACAACCTTAAACTCGCCGACTTCGGTTCCGCGGAGTGGTTCGGCGACGGGAGGAACATGAGCGGGGTGGTGGGGACGCCGTATTACGTGGCGCCGGAGGTTCTGTTGGGGAGAGAGTATGATGAGAAAGTTGATGTTTGGAGTTGCGGTGTTATTTTGTACATAATGTTGAGTGGGATTCCTCCTTTTTATGGTGACTCTGCTGCTGAGATTTTTGAGGCTGTTGTCAGGGGTAACCTTAGGTTTCCTTCTAGGATCTTTAGGTCTGTTTCTCCTTCTGCTAAGGATCTCTTGAGGAAAATGATTTGCAGGGACGCTTCCAGAAGATTCTCTGCTGAACAAGCCTTGAGACACCCTTGGATCTTGAGTGCCGCTGACACCGTTGATTTGACTTGA 834 0.5288 MCEALKTQYQVCEEEEIGRGRFGTIYRCFHPNSNEPFACKLIHKSLLSDSTDRQCLQNEPKYLSLLSPHPNVLQIFDFFEDDHNLAIVVELCQPLTLFDRIVAHNPLPEPQAASLVKHLLLAVAHCHRLGVAHRDIKPDNILFDSNDNLKLADFGSAEWFGDGRNMSGVVGTPYYVAPEVLLGREYDEKVDVWSCGVILYIMLSGIPPFYGDSAAEIFEAVVRGNLRFPSRIFRSVSPSAKDLLRKMICRDASRRFSAEQALRHPWILSAADTVDLT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1560 277 SMART serkin_6 11 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1560 277 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1560 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 275 - -
Apr8g1560 277 CDD STKc_CAMK 8 266 - -
Apr8g1560 277 SUPERFAMILY Protein kinase-like (PK-like) 14 270 IPR011009 -
Apr8g1560 277 Gene3D Transferase(Phosphotransferase) domain 1 2 275 - -
Apr8g1560 277 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Apr8g1560 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Apr8g1560 277 ProSiteProfiles Protein kinase domain profile. 11 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1560 277 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 3 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1560 Apr-Chr8 25399263 25400379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1560 15 275 EF-hand Containing Proteins AT1G50700 40.909 1.25e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr8g1560 Pkinase 9.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1560 - K08794 gmx:548089 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0857 4 6923139 6924078 Apr8g1560 8 25399263 25400379 ECH
Apr8g1560 8 25399263 25400379 Apr8g1560 8 25399263 25400379 ECH