Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1556 ATGGCGACACCGTCGTCCTCCTCGGTTCCGCAATCGCAATTCACCTATTCCAACTCCTATTTCCCCGTCCCCTTTCACCTTCAGCAACCCGCAACCTCTCACTATGCTGCACACTACGTCGCCGCTCCCTCCGTGCAAATCCCCCCGCCTCCTCTCGTCGGTCCCGTTGCCCCGACTCCGGTGGCCGGCGTTTACCCCATCGTGCCGCAATATCAGGCGCAGCAATTATTTGAGAGGGATGCACAAATAATAACACCGCAAGCTCTTGAAAGTGTTAAGGCAGCGATTGCAAGCAGCGACGTGGAGCACAAAGCTGAGACTAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGTCAAACTTGGGAGGATCCTATTCTCGCAGAGTGGCCTGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGATGATGTTCTTTCGAAAGCATTTTCCCGATTCCCTTCGTTTAATATGGCACGAGTTGTTAGAGATAAGCGGACTGGAAAAACAAAGGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGATCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGGCCTATAAAACTACGGAAGAGTAAGTGGAAGGAAAGGACGGATTATGAGGCTCTGGAAAAACAGAAGAATCAAATTCAGAAGAGACTGAAACTGCCAAGGAAAGGTGTGCTGCACAAGTGA 729 0.4883 MATPSSSSVPQSQFTYSNSYFPVPFHLQQPATSHYAAHYVAAPSVQIPPPPLVGPVAPTPVAGVYPIVPQYQAQQLFERDAQIITPQALESVKAAIASSDVEHKAETKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNQIQKRLKLPRKGVLHK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1556 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Apr8g1556 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 206 IPR000504 GO:0003723
Apr8g1556 242 Gene3D - 85 225 IPR012677 -
Apr8g1556 242 PANTHER RNA-BINDING PROTEIN 42-LIKE 28 242 - -
Apr8g1556 242 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 28 242 - -
Apr8g1556 242 CDD RRM_RBM42 128 210 IPR034215 -
Apr8g1556 242 SUPERFAMILY RNA-binding domain, RBD 118 214 IPR035979 GO:0003676
Apr8g1556 242 SMART rrm1_1 135 208 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1556 Apr-Chr8 25351227 25355025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1556 136 234 Eukaryotic Initiation Factors Gene Family AT1G71770 28.000 1.46e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1556 K25079 - gmx:100807693 425.246