Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1553 ATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAGTATGGGAAGAATCAGTGGGCTCGAATCTCTTCGCTTCTCGTTCGTAAATCCGCCAAACAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCTTCCATCAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCTACGCAGTGGAGAACAATTGCTCCAATTGTTGGTCGTACCCCGTCGCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATACTGCCTGTGTGAAGGATGAGAACTATGAACCCGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCGAAACCTGCACGTCCGGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCTCGAGCCTGGTTGGCCAACACAAAGGGGAAGAAAGCGAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAAAAGAGAGAATTGAAAGCTGCTGGAATCGATATCAGGCAGCGGAAGAGGAAAAGGAGGGGAATTGACTACAATGGTGAAATTCCATTTGAAAAAAGGCCACCTCCAGGGTTTTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCAAAGTTCCCCACTACTATTGAAGAACTTGAAGGAAAAAAGAGGGTTGATGTTGAGACACAGCTAAGAAAGCAGGACATTGCCAAAAATAAAATTGCACAAAGGCAAGATGCTCCATCTGCTATACTGCATGCCAACAAGTTGAATGACCCAGAAATGGTAAGAAAGAGATCAAAACTGATGCTTCCGCTCCCCTAG 894 0.4564 MIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDTACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARAWLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRRGIDYNGEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKKRVDVETQLRKQDIAKNKIAQRQDAPSAILHANKLNDPEMVRKRSKLMLPLP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1553 297 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 297 - -
Apr8g1553 297 CDD SANT_CDC5_II 52 103 - -
Apr8g1553 297 MobiDBLite consensus disorder prediction 203 232 - -
Apr8g1553 297 Pfam Myb-like DNA-binding domain 7 67 - -
Apr8g1553 297 Gene3D - 2 55 - -
Apr8g1553 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Apr8g1553 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 104 IPR017930 -
Apr8g1553 297 Gene3D - 56 112 - -
Apr8g1553 297 SMART sant 55 102 IPR001005 -
Apr8g1553 297 SMART sant 3 52 IPR001005 -
Apr8g1553 297 Coils Coil 164 184 - -
Apr8g1553 297 MobiDBLite consensus disorder prediction 262 282 - -
Apr8g1553 297 MobiDBLite consensus disorder prediction 107 146 - -
Apr8g1553 297 CDD SANT 7 50 IPR001005 -
Apr8g1553 297 SUPERFAMILY Homeodomain-like 30 103 IPR009057 -
Apr8g1553 297 ProSiteProfiles Myb-like domain profile. 51 100 IPR001005 -
Apr8g1553 297 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1553 Apr-Chr8 25269572 25272118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1553 1 297 MYB-Related Transcription Factor Family AT1G09770 89.226 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1553 Myb_DNA-bind_6 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1553 K12860 - aprc:113872186 584.719