Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1552 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAGTATGGGAAGAATCAGTGGGCTCGAATCTCTTCGCTTCTCGTTCGTAAATCCGCCAAACAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCTTCTATCAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAACTACTTCATCTTGCTAAGCTTATGCCTACGCAGTGGAGAACAATTGCTCCAATTGTTGGTCGTACCCCGTCGCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATACTGCCTGTGTGAAGGATGAGAACTATGACCCCGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCGAAACCTGCACGTCCGGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCTCGAGCCCGGTTGGCCAACACAAAGGGGAAGAAAGCGAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTACAAAAAAAGAGAGAATTGAAAGCTGCTGGAATCGATATCAGGCAGCGGAAGAGGAAAAGGAGGGGAATTGACTACAATGGTGAAATTCCATTTGAAAAAAGGCCACCTCCAGGGTTTTTTGATGTTACTGATGAAGATAGACCAGTGGAACAGCCAAAGTTCCCCACTACTATTGAAGAACTTGAGGGAAAAAGGAGGGTTGATGTTGAGACACAGCTAAGAAAGCAGGACATTGCCAAAAATAAAATTGCACAAAGGCAAGATGCTCCATCTGCTATACTGCATGCCAACAAGTTGAATGACCCAGAAACGGTAAGAAAGAGATCAAAACTGATGCTTCCGCCCCCCCAGATTTCTGATCAGGAATTGGAGGAAATTGCAAAGTTGGATTATGCCAGTGACCTTGCAGGGAATGAGGAACCTGTGGAAGGTGGTGGTGCAACACGTGCTCTTCTGGCTAATTATGCTCAAACACCTGGCCAAGGAATGACTCCTTTACGTACCCCTAAGAGAACACCAGCTGGTAAAGGAGATGCTGTTATGATGGAAGCTGAAAATCTGGCCAGGTTGAGAGAGTCTCAGACACCGTTGTTAGGAGGAGAGAACCCAGAGCTGTATCCTTCGGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAGATTCAGACTCCAAATCCGATGCTGACTCCTTCTGCAACTCCTGGTGGCGAAGGTCTCACTCCTAAAATTGGTATGACACCAGCAAGAGATGGTTTAACTTTTAGCATGACGCCGAAGGGAACTCCTCTTAGGGATGAGCTACATATTAATGAGGAAATGAATATGCATGAAAGCACTAAACTTGAGCTACAGAGACAAGCTGATGTAAGAAGAAGTTTGCGCTCTGGTTTAGGAAGGCTTCCACAGCCTAAAAATGAGTACCAGATCATGATGCAGCCAGTTCCAGAAGATGCTGAAGAGCCAGAGCAGAAGATTGAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCAAGGCAGCAGGCATTACTTAGAAAGAGATCAAAAGTTCTTCAAAGGGAACTTCCCAGGCCTCCTGCTGCGTCATTGGAGCTTATAAGAAATTCCTTGATGAGAGCTGACGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATTAGAAGGGAGCTTCTAACTTTACTGGAGCATGACAATGCGAAGTATCCACTTGGTGAGAAAGTGCATAAGGAGAAAAAGAAAGGAGCCAAGCGCACAGTAAACAAGCCTGCTGTCCCTGTGATAGAAGATTTTCAGGAGGATGAAATAAAAGATGCTGACAAGTTGATAAAGGAAGAGGCCCAGTTTCTCTGTGTAGCAATGGGACATGAAAGTGAACCCCTTGATGAGTTTATTGAAGCTCACAGAACTTGCCTTAATGATCTTATGTACTTTCCTACCCGTAATGCCTATGGTCTCTCAAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAACAAATTGGATGATGGCAAGTATAAGTCAGTAGACTCAGTACGGCTTGAGAAGAAGGTGATGGTTCTCACACAAGGTTATGAGGTATTAAAAAAGAGCCTCTGGCCTCAAATTGAGGCTACTTTCAAGCAGATGGACATAGCTGCAACAGAATTAGAATGCTTTGAAGCTTTGCAAAAGCAGGAGCAAGTAGCAGCATCTCACAGGATAAATAATCTATGGGCTGAAATACAGAAGCAAAAGGAACTTGAGAAAACTTTGCAAATTGGGTATGGGAGTCTAATAGAAGAGCTGGAAAAGATACAAAATATCATGGACCAATACAGATTACAAGCACCAAAGCAAGAAAAAATTGAAGCAAACAATCATGTTTGTGAGTCAACTGAGACTGCAGCCAGTGAAATGGATAATATACAGGGTACAGAGATTTGTAAAGTTGTGCCTCACACGGTGGAGCATGGACATGCTCTTGAAGTTGATCCATCTCATGATGGAACTGCTGACCAGGAAGTAGATATTGTGCAGGATCAGGCTACTTGTAGCCCCAAAAATGACATGGTTGTGGATTCTGATAAAATGCAAATGACACACGGCTTTGATGTTAAGTTGCCAGATGCTACACCCATTGCAGAAGATGTCAATAAAAAAGTGGAAGTGGAAGGTGCCGGTACTGATGCCAACAATGGAGAGACCATGCTAGAAATGGGTGCTGCTGTGGAAACAGGTAGTTATGAGAGAAACAAGGATCAAGATGTAGTTGTGGAAGCTGTAAATTCACAAGGTAACAGCATGCAAGAAACCACCGCTTTTGATGAGAAGGATAAGATGCAAGTTGCTGATGGCAGAGGGGAGGAGGCAAATAGACTGTAG 2970 0.4428 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDTACVKDENYDPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRRGIDYNGEIPFEKRPPPGFFDVTDEDRPVEQPKFPTTIEELEGKRRVDVETQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELEEIAKLDYASDLAGNEEPVEGGGATRALLANYAQTPGQGMTPLRTPKRTPAGKGDAVMMEAENLARLRESQTPLLGGENPELYPSDFSGVTPKKKEIQTPNPMLTPSATPGGEGLTPKIGMTPARDGLTFSMTPKGTPLRDELHINEEMNMHESTKLELQRQADVRRSLRSGLGRLPQPKNEYQIMMQPVPEDAEEPEQKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRADGDKSSFVPPTSIEQADEMIRRELLTLLEHDNAKYPLGEKVHKEKKKGAKRTVNKPAVPVIEDFQEDEIKDADKLIKEEAQFLCVAMGHESEPLDEFIEAHRTCLNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVRNKLDDGKYKSVDSVRLEKKVMVLTQGYEVLKKSLWPQIEATFKQMDIAATELECFEALQKQEQVAASHRINNLWAEIQKQKELEKTLQIGYGSLIEELEKIQNIMDQYRLQAPKQEKIEANNHVCESTETAASEMDNIQGTEICKVVPHTVEHGHALEVDPSHDGTADQEVDIVQDQATCSPKNDMVVDSDKMQMTHGFDVKLPDATPIAEDVNKKVEVEGAGTDANNGETMLEMGAAVETGSYERNKDQDVVVEAVNSQGNSMQETTAFDEKDKMQVADGRGEEANRL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1552 989 CDD SANT_CDC5_II 55 106 - -
Apr8g1552 989 SMART sant 58 105 IPR001005 -
Apr8g1552 989 SMART sant 6 55 IPR001005 -
Apr8g1552 989 MobiDBLite consensus disorder prediction 381 421 - -
Apr8g1552 989 MobiDBLite consensus disorder prediction 399 413 - -
Apr8g1552 989 MobiDBLite consensus disorder prediction 222 236 - -
Apr8g1552 989 Pfam Myb-like DNA-binding domain 10 70 - -
Apr8g1552 989 Gene3D - 5 59 - -
Apr8g1552 989 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 800 - -
Apr8g1552 989 MobiDBLite consensus disorder prediction 210 236 - -
Apr8g1552 989 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Apr8g1552 989 Coils Coil 167 187 - -
Apr8g1552 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Apr8g1552 989 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Apr8g1552 989 MobiDBLite consensus disorder prediction 110 150 - -
Apr8g1552 989 Coils Coil 791 811 - -
Apr8g1552 989 Coils Coil 682 709 - -
Apr8g1552 989 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Apr8g1552 989 MobiDBLite consensus disorder prediction 968 989 - -
Apr8g1552 989 Pfam pre-mRNA splicing factor component 406 654 IPR021786 -
Apr8g1552 989 Gene3D - 60 114 - -
Apr8g1552 989 MobiDBLite consensus disorder prediction 959 989 - -
Apr8g1552 989 CDD SANT 10 53 IPR001005 -
Apr8g1552 989 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1552 Apr-Chr8 25262948 25268630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1552 1 838 MYB-Related Transcription Factor Family AT1G09770 75.268 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1552 Myb_Cef 7e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1552 K12860 - gmx:100801352 1578.15