Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1550 ATGGTGAGGACTCCTTGCTGTGAGAAGATGGGCTTGAAGAAGGGACCTTGGACACCAGAAGAAGATCAGATATTGATTTCTCATATTCAACTATATGGCCATGGAAACTGGCGGGCCCTTCCAAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGACTTCGCTGGATAAATTACTTGAGACCGGATATTAAACGTGGGAAATTCAGCAAGGAAGAAGAAGAGATCATCCTCAAACTGCACGGAATTCTCGGAAATAGATGGTCTTCTATTGCGGCAAAATTACCAGGACGAACAGACAACGAAATTAAGAATTTTTGGCACACCCATTTGAAGAAGAGGCTCGAGAGAAGTGAAGTGCACAGTATGATGAATGCCTCTTCTAATCCCTTGCAAGAGGCCCAAGCAGCTTCTAGTTCGGGGACTTTAATAAATATGGCACGAGTAGGGGTGGATGGTGCTACTACTTCTAGTGTCACTGGGAAAGTGTTGATTGCCAATGATAGTTTACACTTGAGGAGAAATCCATCTATTCGTCTAGGACTTTATGGTGCCGTCTCTTCTGATATGTCAGGAGGAACAATTGGCAATAATTCTCCCAGTGAGTTTGGTGAAGAGATGGAATTTTGGTATAACATGTTCATGAGCAGTCATCACAAGGGCATGGAAATGTAA 678 0.4307 MVRTPCCEKMGLKKGPWTPEEDQILISHIQLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEEIILKLHGILGNRWSSIAAKLPGRTDNEIKNFWHTHLKKRLERSEVHSMMNASSNPLQEAQAASSSGTLINMARVGVDGATTSSVTGKVLIANDSLHLRRNPSIRLGLYGAVSSDMSGGTIGNNSPSEFGEEMEFWYNMFMSSHHKGMEM* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1550 225 CDD SANT 69 112 IPR001005 -
Apr8g1550 225 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Apr8g1550 225 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr8g1550 225 CDD SANT 16 61 IPR001005 -
Apr8g1550 225 SMART sant 66 114 IPR001005 -
Apr8g1550 225 SMART sant 13 63 IPR001005 -
Apr8g1550 225 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr8g1550 225 Gene3D - 13 66 - -
Apr8g1550 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr8g1550 225 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Apr8g1550 225 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr8g1550 225 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr8g1550 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr8g1550 225 Gene3D - 68 140 - -
Apr8g1550 225 PANTHER MYB TRANSCRIPTION FACTOR 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1550 Apr-Chr8 25161125 25162324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1550 1 218 MYB Transcription Factor Family AT2G31180 47.083 3.57e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr8g1550 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1550 K09422 - gmx:100797027 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1550 8 25161125 25162324 Apr4g0026 4 259603 261324 PCT