Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1547 ATGTCAATTACTTTTGGAACTATCATGACTCCTCATCCAAGAGTTATTAAGGCTTATAATGCTATGAGGCCCTTAGGAGTTTCTGATGAAGAGGTGAAACCAGTGTTGAAAAAATTGTTAAAATTGTACGACAAAAAGTGGGAACTTATTGAAGAAGACAATTATCGGACGCTTATAGACGCATACTTTGAGTTAAAAGAAGATAAGAAAGCCGAAGGTAAGAGAAAAGCTCCAATCAGTTATCATAATGGGGAAAGACCGAAACAAAAACTGCACTTGCTAGACGCAGATGACCAGGTTTCATCAACTGACAATTCAAGACAAGTATTGTCTATAGAAGACACTGAAATACCTCCCCAGACTTTTAAACAGGAAAACATTAAACCATCTCAAACTTCCACAAGAGATATGAAGCCCACCACCAGTTCAAAAGTATTGCAGACAACTTTGAGTGATGAAGAAAGGTTCTCAAGTTTACCTTCCATGGCTGCTAGAGATAGAAAATATTATCCTGAGAAAGCATCATCTGCAGGGCATTGTGAAGATCCAATTAATGAAGCTGGCAATTCTCATGTCAAGAGGAAAAATATATCAAATGTTCTGTATCAGAAGGAGCTTATGACACCAAGAACTGAGAAACCCAAATTACATCTTGGACCTAGTTCCATAAGTTACAATGGCTCATCCAATGCTTTAAAAGGAAATCTTCGTGCCAAATCTATGTCAGCTCTGTATCAGAATATGCACAAGATAGATGATAGCCCAGCATGCAATAATAACACCAGGACTTATAAGGGTAATATTGATATTGCTTCTACATCTTTAGGAGAAGTTAAAATTTCTTTAAACCGTGATGCAGCCTTGGGACAACCAAACTTCCGTATTCCTGATTTGGATGCTGTTATGAAGTCCCTAGAGGAGAAATACCTGAGCTCTTACAAGACTGTTGAGCCCAAATCATCTATGGTGAAGCTATTAGACGATTTGTGTGAAATTTATTTGAAGATGGGCTTGAATTTAAATCCTCAGTATGGCAATTCACATAACGCGACATGTCTGCCACAGCAAGCTGTTGCTAACGACGAAAAGAATTCCTTTCATTTTCTCACTGACATATCCAAAGGTTCAGAGAATGTTAAAATATCATTATTAGACGAAACTGGAAGTGAGGACTTACCAAAGTTCAATTACATACCATATAATATAATATATCAAAGTGCTAATGTAAATATTTCATTTGCTCGTGTTGCGGATGATGGTTGCTGTGCTGATTGTTCCGGCGACTGTCTTTCCTTATCATTTCCTTGTGCATGTTCTCAAGAGACAGGTGGAGAGTTTGCTTACACTACAGAAGGTTTGTTGAAAGAAGAGTTTTTAGCAGTTTGCATGTCTATGAAAATGGAACCTCAAGAAGATCATTTTGTGTATTGTCAAGAATGTCCACTAGAGAGGTCTAGGAATGACACCATGCCCGAACCATGCAAGGGGCATTTGGTTAGGAAATTTATCAAGGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTGTTTTTGACTCGAGAAGGAAAAGGATGGGGCCTCAGAACCCTAGAAGATTTGCCCAAGGGTAGCTTTGTATGTGAATATGCTGGGGAAATTTTAACCAATACAGAATTATATGACAGAACAATGCAGAACAGCGGCAATGACAGACACACATATCCTGTAACCCTTGATGCAGACTGGGGATCGGAAGGGGTGTTGAAGGATGAGGAGGCGCTGTGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCTGATGCAAATCTCATAGACATCCCTGTTGAAGTGGAGACTCCTGATCGTCACTATTATCATCTTGCCCTCTTTACAAACAGAAATGTAAATGCATACGAGGAGTTGACATGGGATTATGGTATTGACTTTGATGATCATGACCATCCTATTAAAGCATTTCGATGTTGCTGTGGAAGTACCTTCTGCCGTGATAAGAAACAAAAAGGCACTAGATCATTGAAAACAAAAAAATCAGGGACACATGCACACAAACGGAGTAGTTGA 2127 0.3902 MSITFGTIMTPHPRVIKAYNAMRPLGVSDEEVKPVLKKLLKLYDKKWELIEEDNYRTLIDAYFELKEDKKAEGKRKAPISYHNGERPKQKLHLLDADDQVSSTDNSRQVLSIEDTEIPPQTFKQENIKPSQTSTRDMKPTTSSKVLQTTLSDEERFSSLPSMAARDRKYYPEKASSAGHCEDPINEAGNSHVKRKNISNVLYQKELMTPRTEKPKLHLGPSSISYNGSSNALKGNLRAKSMSALYQNMHKIDDSPACNNNTRTYKGNIDIASTSLGEVKISLNRDAALGQPNFRIPDLDAVMKSLEEKYLSSYKTVEPKSSMVKLLDDLCEIYLKMGLNLNPQYGNSHNATCLPQQAVANDEKNSFHFLTDISKGSENVKISLLDETGSEDLPKFNYIPYNIIYQSANVNISFARVADDGCCADCSGDCLSLSFPCACSQETGGEFAYTTEGLLKEEFLAVCMSMKMEPQEDHFVYCQECPLERSRNDTMPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFLTREGKGWGLRTLEDLPKGSFVCEYAGEILTNTELYDRTMQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHDHPIKAFRCCCGSTFCRDKKQKGTRSLKTKKSGTHAHKRSS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1547 708 Gene3D - 3 68 IPR043017 -
Apr8g1547 708 MobiDBLite consensus disorder prediction 76 97 - -
Apr8g1547 708 Gene3D SET domain 349 671 IPR046341 -
Apr8g1547 708 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 699 IPR025776 -
Apr8g1547 708 ProSiteProfiles SET domain profile. 527 661 IPR001214 GO:0005515
Apr8g1547 708 SUPERFAMILY SET domain 379 684 IPR046341 -
Apr8g1547 708 Pfam Pre-SET motif 372 519 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g1547 708 SMART preset_2 369 511 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g1547 708 MobiDBLite consensus disorder prediction 76 144 - -
Apr8g1547 708 ProSiteProfiles Pre-SET domain profile. 421 524 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Apr8g1547 708 CDD SET_SETDB-like 393 661 - -
Apr8g1547 708 Pfam SET domain 539 661 IPR001214 GO:0005515
Apr8g1547 708 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 9 692 - -
Apr8g1547 708 MobiDBLite consensus disorder prediction 98 144 - -
Apr8g1547 708 Pfam Ubiquitin-binding WIYLD domain 14 67 IPR018848 GO:0018024
Apr8g1547 708 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 9 692 - -
Apr8g1547 708 SMART set_7 527 667 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1547 Apr-Chr8 25114678 25122317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1547 503 684 C2H2 Transcription Factor Family AT2G23740 42.246 1.21e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Apr8g1547 Pre-SET 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1547 - - gsj:114402909 1130.93