Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1543 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGACAATTCAGACGATGAGGAATCAATGCTTCCTGAAATAGATGATGAAGTGCATCTTGAAGAGCCTTTAACAGAAGAGGAAATACAAGATCTTATTTCTGAATTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGCAGAGTGAAGTTAGACAAGAATTGAAACAGACTCTTCAAGGGGATGATTTGGAAACTGCTGTTGCGGACGAAATGACTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGATCTTGAAACCGAAAGTGCCCACTTGCTGGAGCAACTTGATGGGGCTGGGATTGAGCTTCCAAGTCTTTATAAGCACATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAGGAGGAATCATTGGGTTGGGTCTTTGGCAACTGCCGAAATTGCTGAGTCAGTTGCTGATGCTGATAAATATCTACAAGTAAACAGACCTGTTAGAAGGCGACACGGTAAATTACTGGAAGAGGGTGCCAGTGGTTTCCTCCAAAAAAAACTTTGTGAAGAAACCCAGGAGCCTGTGAAGAAAGAAACTGAGGGGGACTGGGATCTGTTCAATAAAATAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCCTTGGGCTTCAGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAAATTTCCAGGTGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCCACTGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAGCAAAGGAGACAATATAAAAAGGTCAAAGAAGAGGATGATGCAATTGCCGATAGGAAGCTTCAAATCCGTTTGAAACATAGGAGACATCGAAAGAAAAGTGAACAGTGTGAAATGAGCTCCCATATCCTGGCAATGGAGAACCACGTACAGAGGCTTTCATCTGTTGATCATTTAAATCCTGTTAAGAAGGAAGGAAATGGTGATAATGGGAAAAGTGTCCCTGACAATGGCAAGGTTGTGCATGGGAAGATGGAGAATGATAAAATTGAAGATTTTGAAGCGAGTTGTCATCTTGACAAAGAAAAGCCTACAAGTACTGGCAATTTGTCAGACCCAGCCAAATCTTCGTTGGATGATACTATTGATCAGAGGGGAATCAAACGTGTAAATGATGGTGAGCTTGATACTGATAATAAAAAGTGCCGGACTATAATTATTGATGGTGATGATGAAGCAGATGCCGCTGAAGATAAATTAGATTGCAATACCCCTGAGGATCAATCCAAGACAAAAGAAGATTTATGTAACAATGGTGCTGATTCTCTTCCTTTGGAGTGCCCAGATGGAAAATTTTGCTGCACAGTTTGTGATAAATTGGCTCTTCAAGTGTATCAACACCCTTTTTTGAAAGTGATTATTTGTGGAGATTGCAATTCCTTTTTGAAAGAAAAGACACATGCAAAGGATCTAGGACATGATTGCTCTGAGGGTTATTGTACATGGTGTGGAGGAAGGAATGAGCTAGTTAGCTGTAAATCATGCAAGATTTTATTCTGCACGAAATGTTTAAGGAAGAATCTTGGTGTAGAATTTATTGCTGAAGCTCAGGCCACTGGCTGGCATTGTTATTGTTGCTCTCCAAATCTTCTGCAAAGTCTATCATTGCAACTAGAGAAAGCAATGAGGTCTGCTGATATAACAGTTTCCAGTTCTTGTAGTGATTCAGATAATTCAGATGATTCGGATGCAGAGATTAATGTAACAATCAGCACGAAGCGAAGACCCAAAAAGAAGATTCGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAACAGAAGATAGCAATTGAGAAGGAACGTCAGGAACGTCTAAAGTCTTTGCGAGTGCAGTTCTCTGCCTCATCAATTGAGATGAGCTCTGCTGGATCAAATAGGAATTTATCAGAAGGTGCAAACATTGAAGTTCTTGGTGATGCGCTAGCAGGGTACATAGTGAATGTTGTCAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCAGCTAAGCTGAAGGCCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTGAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCACACAATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACCGCACTCATAGTCACACCTGTCAATGTGCTACACAATTGGCGGCAGGAGTTCATGAAGTGGAGACCTTCAGAGATAAAGCCACTGAGGGTCTACATGCTGGAAGATGTACCAAGAGATAGGAGGGCAGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATAGTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGACCGACAAATGGCCAGAGAAATTTGCCATGCTTTGCAGGAAGGACCGGACATTCTTGTTTGTGATGAAGCCCATATGATAAAGAATACAAAGGCTGACATAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACCGGATCACCTCTTCAAAACAATCTTATGGAATATTATTGTATGGTTGATTTTGTGAGAGAAGGTTTTCTGGGGAGCAGTCATGAATTTCGAAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACCAATTCAACACTGACTGATGTTAAAATTATGAACCAAAGGTCTCATATCCTCTATGAACAGTTAAAAGGATTTGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCCAAAACTGTCTTTGTGATAACTGTCAAGCTATCTCCCTTACAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTAGTTCCCAGGTGCATCCTGACAAGTTAAGAAAGAGATGTTTTTTTGCTGGGTACCAGGCATTGGCTAGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTATGTTAAACATGAAGATGCTGTCGAGAATTTTCTTGTGGATGATAGTTCAAGTGACGAAAATTCTGATTATAATGTGCTCGCTGGAGAGAAGATGAGGTATGCTAATGAATTGCTGCAAAGGAAGGATGGTAATGGCTTTTTTATAAAGGGTTGGTGGAATGACCTTCTTCATGGGAAAACATATAAAGAGCTTGATCACAGTGGCAAAATGGTTTTGCTGATAGAGATACTAACCATGAGTTCTGATGTGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATTCCAACACTAGATCTCATAGAACTTCATCTCTCAAGGATGCCCCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAAAGACAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGGAGGGTAAAATGCACTCTGATTTCAACTAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGGGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGAGCATGGAGGTACGGGCAGACAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAAAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCAGCTAGGGTGGTGGATAGACAACAGGTGCATAGGACCATATCAAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTAGCTGAACTAACTCAAGAAAATGGGCATACTTGTGATCAAAACAACCCAATTTTGGTGGGGCATTCACTGAAACATACAGTTCCACATTCAAATGGAAGTAGTCATTCTGATAAGTTAATGGAAAGCTTACTTGGCAAACACCATCCACGTTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATAGAAAATCGCTGGAGTGGGAAGAAGTGCAGAGAGTGCCACTTGGTGAGTCTATGCCTGATCCAAAGCCAGAAATGCCGAATGCAAGGCCCCACATATCAGAAACCCAAAGCATCTTGCCAAGTAAACTGAGCAGACGTTTCACGACGCGGAAATGCACTAACCTTGCGCACCTGTTGACACTTAGAAGTCAGGGTACGAAATTTGGTTGCAGCACAGTCTGTGGGGAATGCGCCCAGGAGATAAGGTGGGAAGACTTGAAGAAGAGATAG 4479 0.4162 MEGKTEDEVVDIESASSGSFNDNSDDEESMLPEIDDEVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVQSEVRQELKQTLQGDDLETAVADEMTTFKEEWEAVLDDLETESAHLLEQLDGAGIELPSLYKHIEREAPNVCSTEAWKRRNHWVGSLATAEIAESVADADKYLQVNRPVRRRHGKLLEEGASGFLQKKLCEETQEPVKKETEGDWDLFNKIVSDGSGIDASFGSKPWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQYKKVKEEDDAIADRKLQIRLKHRRHRKKSEQCEMSSHILAMENHVQRLSSVDHLNPVKKEGNGDNGKSVPDNGKVVHGKMENDKIEDFEASCHLDKEKPTSTGNLSDPAKSSLDDTIDQRGIKRVNDGELDTDNKKCRTIIIDGDDEADAAEDKLDCNTPEDQSKTKEDLCNNGADSLPLECPDGKFCCTVCDKLALQVYQHPFLKVIICGDCNSFLKEKTHAKDLGHDCSEGYCTWCGGRNELVSCKSCKILFCTKCLRKNLGVEFIAEAQATGWHCYCCSPNLLQSLSLQLEKAMRSADITVSSSCSDSDNSDDSDAEINVTISTKRRPKKKIRRILDDAELGEETKQKIAIEKERQERLKSLRVQFSASSIEMSSAGSNRNLSEGANIEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTALIVTPVNVLHNWRQEFMKWRPSEIKPLRVYMLEDVPRDRRAELLAKWRAKGGVFLIGYSAFRNLSFGKHVKDRQMAREICHALQEGPDILVCDEAHMIKNTKADITQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTSSQVHPDKLRKRCFFAGYQALARIWNHPGILQLTKEDKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANELLQRKDGNGFFIKGWWNDLLHGKTYKELDHSGKMVLLIEILTMSSDVGDKVLVFSQSIPTLDLIELHLSRMPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLAELTQENGHTCDQNNPILVGHSLKHTVPHSNGSSHSDKLMESLLGKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESMPDPKPEMPNARPHISETQSILPSKLSRRFTTRKCTNLAHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR* 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1543 1492 ProSiteProfiles ADD domain profile. 481 613 IPR025766 -
Apr8g1543 1492 Coils Coil 1376 1396 - -
Apr8g1543 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1325 IPR027417 -
Apr8g1543 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 982 IPR027417 -
Apr8g1543 1492 MobiDBLite consensus disorder prediction 399 418 - -
Apr8g1543 1492 Coils Coil 291 311 - -
Apr8g1543 1492 Gene3D - 701 982 IPR038718 -
Apr8g1543 1492 PANTHER RAD54-LIKE 29 1490 - -
Apr8g1543 1492 PANTHER RAD54-LIKE 29 1490 IPR044574 GO:0016887
Apr8g1543 1492 SMART ultradead3 724 945 IPR014001 -
Apr8g1543 1492 Pfam SNF2-related domain 750 1052 IPR000330 GO:0005524|GO:0140658
Apr8g1543 1492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 933 IPR014001 -
Apr8g1543 1492 Coils Coil 107 127 - -
Apr8g1543 1492 CDD ADDz_ATRX 489 587 - -
Apr8g1543 1492 Pfam Helicase conserved C-terminal domain 1132 1257 IPR001650 -
Apr8g1543 1492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 593 IPR013083 -
Apr8g1543 1492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1134 1305 IPR001650 -
Apr8g1543 1492 SMART helicmild6 1160 1257 IPR001650 -
Apr8g1543 1492 CDD SF2_C_SNF 1125 1268 - -
Apr8g1543 1492 SUPERFAMILY FYVE/PHD zinc finger 535 590 IPR011011 -
Apr8g1543 1492 MobiDBLite consensus disorder prediction 1 32 - -
Apr8g1543 1492 MobiDBLite consensus disorder prediction 401 416 - -
Apr8g1543 1492 Gene3D - 993 1336 IPR027417 -
Apr8g1543 1492 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1543 Apr-Chr8 25043457 25069017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1543 758 1310 RAD5 or RAD16-like Gene Family AT5G43530 25.314 5.86e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr8g1543 SNF2_N 5.6e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1543 K10779 - gmx:100794911 2492.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1543 8 25043457 25069017 Apr8g1543 8 25043457 25069017 ECH