Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1532 ATGTCCACCACAGCGCAAGCCAAAGCCAAGAGAAAAATGGCGGCGACTAAGAAGCCACTCTCTCATCCTCCCTTTGCCGTGATGATAACAGAGGCTATTGCAAGTCTAAAGGAGAGAACTGGTTCGAGCCAGTATGCGATAACAAAGTTTATTGAAGGGAAGCACAAGGAGTTGCCTCCAACATTTCGTAAGCTGATTCTCCACCAGCTCAAGAAGGCTGTAGCCTCAGGCAAGCTAGTTAAAGTAAAAAACTCATTCAAGCTCGCGCCGACTCGATCGGCTCCGGTTAAAGCTGCTCCTGCTCCTGCTGCTAAGAAGCCTAAAGCTGTGACTAAGCCCAGTACCAAGGCTGCTGCGTCCAAGCCCAAAGCTGCAGCTAAAACTAAGGCTGTTGCCAAGCCCAAGGCGAAGACCACGGCGTCAAGTGCTAAGCCAAAGGCGAAGGCGGCTAAGGTGACGGTTGCGAAGAAGGTTGCTGCTAAGCCAGCGAGGAAGACGCCAGTAAAGAGTGCAAAGAAGCCAAAGAGTGTTAAATCGCCGGCGAAGAAGGCTAAGAAGTGA 561 0.5116 MSTTAQAKAKRKMAATKKPLSHPPFAVMITEAIASLKERTGSSQYAITKFIEGKHKELPPTFRKLILHQLKKAVASGKLVKVKNSFKLAPTRSAPVKAAPAPAAKKPKAVTKPSTKAAASKPKAAAKTKAVAKPKAKTTASSAKPKAKAAKVTVAKKVAAKPARKTPVKSAKKPKSVKSPAKKAKK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1532 186 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g1532 186 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g1532 186 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g1532 186 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g1532 186 PRINTS Histone H5 signature 144 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g1532 186 PRINTS Histone H5 signature 166 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Apr8g1532 186 CDD H15 21 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g1532 186 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g1532 186 MobiDBLite consensus disorder prediction 92 186 - -
Apr8g1532 186 Gene3D - 17 94 IPR036388 -
Apr8g1532 186 PANTHER HISTONE H1 2 185 - -
Apr8g1532 186 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
Apr8g1532 186 MobiDBLite consensus disorder prediction 162 186 - -
Apr8g1532 186 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr8g1532 186 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1532 Apr-Chr8 24758163 24759045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1532 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 3.81e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1532 K11275 - gmx:100810590 140.969