Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1528 ATGGTGTCGGGACAAGTCGTGAAGGTGAAGAGAAATACGCTACGAGCATGCATGACATGCCCTCTTTGCAATAACCTCTTCAAAGATGCTACCACCATCTCTCTCTGCCTTCATACCTTTTGCAGGAAGTGCATATATGAGAAACTCTCGGATGAGGAGATGGATAGCTGCCCAGTGTGCAATATTGATCTTGGCTGCCTTCCGGTGGAAAAACTCAGGCCAGACCATAATTTGCAAGATATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAGATCAAGGCCCAAGAAGTTTTGTCTTCAATATCCTTGCCTGCAAAAAGGAAAGAAAGATCACTTTCATCATTGGTTGTAAGTGCTCCCAAGGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGCTTTCTACTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATACGGATTCTTCCGTGGCTGAGCCTTCTAAGAAGCATAAGCCCAATGAAGATGCAGAGAACAGTGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTAAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTGGCCAAATTAGAGTCTCCAATTACTCCTCACGGTGGACAAGATACGCCTGAAATTACAACCAGAACAGACCTACCTGCTTCTGTCCAGAGTGAATTAAACATTCCTAAAAACAAAAATAAAGATACTGGACATAAAACAATATTTGGAGATGACAAGGATGGAAACAGCTTGCCATCAGGACCGGTGAAGAGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGGCTCATCTCCTGTCCTGCTAGATGCAACAGGAGGAAAGAGCAACAGAAAAAACAGTCCCATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAAATCTCAGCATGTTACTTAAGAATAAAGGATGGTACCGTGCCTGTCTCATTTATTCAGAAGTACCTAGTGAAGAAACTTAATCTTGCCAGCGAAGCAGAAGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTCTGCAACTGCATAACTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCGTCTGTGGGGTCCTCAGCCAAGGATTTTGTGATGGTTTTGTCCTATTGTCGAAAGGCCTTGCCTTCTTGA 1299 0.4365 MVSGQVVKVKRNTLRACMTCPLCNNLFKDATTISLCLHTFCRKCIYEKLSDEEMDSCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLEESIKKEETNGEDNTDSSVAEPSKKHKPNEDAENSVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPITPHGGQDTPEITTRTDLPASVQSELNIPKNKNKDTGHKTIFGDDKDGNSLPSGPVKRRRLRPAGQKRVAASEMSGSSPVLLDATGGKSNRKNSPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPS* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1528 432 MobiDBLite consensus disorder prediction 234 258 - -
Apr8g1528 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 429 IPR044807 GO:0004842
Apr8g1528 432 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 4 429 - -
Apr8g1528 432 SUPERFAMILY RING/U-box 14 85 - -
Apr8g1528 432 MobiDBLite consensus disorder prediction 155 193 - -
Apr8g1528 432 MobiDBLite consensus disorder prediction 259 273 - -
Apr8g1528 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Apr8g1528 432 SMART ring_2 20 60 IPR001841 -
Apr8g1528 432 MobiDBLite consensus disorder prediction 155 191 - -
Apr8g1528 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Apr8g1528 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Apr8g1528 432 MobiDBLite consensus disorder prediction 208 224 - -
Apr8g1528 432 Gene3D - 310 408 - -
Apr8g1528 432 MobiDBLite consensus disorder prediction 208 315 - -
Apr8g1528 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1528 Apr-Chr8 24734030 24739324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1528 1 351 C3H Transcription Factor Family AT2G30580 44.624 1.34e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1528 K16277 - gmx:100783999 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1528 8 24734030 24739324 Apr8g1528 8 24734030 24739324 ECH