Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1525 ATGACGAGCGTGTTGGGTGCAGAGAGAGAAATGATAAATTTTGAAGAGACCGAGTTGCGACTCGGCCTACCTGGCGCCTCTGCAAACGATCATGCCGAGTTAACTCTGAAAAGCGGTGCTGCCAAGAGAGGGTTCTCAGAGACTGCTTCTGTTGATTTGCAGCTTAACCTTTCCTCCAATAACGACTTGCCTTCTTCCTCAGTTTCACCCTCAACCATCCCTACAGAAAAACCCAAAGAGAAGACTACTGCTGCATCTCCTCCTCGTGTTAATGACCCAACAAAACCACCTGCAAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAAAACATCGTGAACGTTCAAAGGAGCAACAACGATGAAGCAGAGAAGAGTGGTGCAGGAGGAGGGGCTTTCGTGAAGGTGAGCATGGATGGAGCACCGTTTCTACGAAAGGTGGATCTGAAGATGTACAAGAGCTACCATGAGCTGTCAGATGCGCTGGCTAAAATGTTCAGCTCTTTCACCATTGGCAAGTGTGGGTCCCAAGGCACGAAGGACTTTATGAATGAGACCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTGGGTGACGTGCCCTGGGAAATGTTCGTTGAATCCTGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATTGGCCTTGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTAA 759 0.4888 MTSVLGAEREMINFEETELRLGLPGASANDHAELTLKSGAAKRGFSETASVDLQLNLSSNNDLPSSSVSPSTIPTEKPKEKTTAASPPRVNDPTKPPAKAQVVGWPPVRSFRKNIVNVQRSNNDEAEKSGAGGGAFVKVSMDGAPFLRKVDLKMYKSYHELSDALAKMFSSFTIGKCGSQGTKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1525 252 MobiDBLite consensus disorder prediction 57 102 - -
Apr8g1525 252 SUPERFAMILY CAD & PB1 domains 128 233 - -
Apr8g1525 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Apr8g1525 252 Pfam AUX/IAA family 16 243 IPR033389 -
Apr8g1525 252 Gene3D - 129 246 - -
Apr8g1525 252 PANTHER AUXIN-INDUCED PROTEIN AUX28 9 245 - -
Apr8g1525 252 MobiDBLite consensus disorder prediction 57 79 - -
Apr8g1525 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 245 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1525 Apr-Chr8 24682373 24685280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1525 128 242 B3 DNA Binding Superfamily AT4G23980 31.304 1.06e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr8g1525 AUX_IAA 3.8e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1525 K14484 - gmx:100781847 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0821 4 6624685 6627160 Apr8g1525 8 24682373 24685280 ECH
Apr8g1525 8 24682373 24685280 Apr8g1525 8 24682373 24685280 ECH