Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1523 ATGGCAGGTAACACATCGGAAGGGTTGGGCGACGATTTCTTCGAGCAGATCTTAGCAGTGCCTGACGCTCAAGTAGGTTATGGAAGAACGGTGGTGAATGACGTGGGAGTGTTACAGTTGGGATCCACAACGTCGTTAATGCCTCTGGGGTTGAATTTGGAGCAAGCTGCTTTTCTAAGACACCAAGATTCCAGAAACTTCCTCCACGACGTCGTTAATGTTGACGCCACCGTTACCAATAACCTCCGTCTCCATAATAACAATAGCACCTCCTCCTCGTCTTCCTCTACTGCACATATCACCGATAGGGATTCGATGCATATGAGGGGTTTGTTTCCAGCGTTTGGACAATTGCATAATCCCACTCACGTTCACTCAGTGCGCCCCACGCTTCCATCGCCTCCTCAGCCACAACTCCACCTCCACCATCACAACCAACAGCACTTTCAGGGGCAGGCACCTGCAGCTCCAGTGTCAATGGCTGCTACGCCACAAGCACCTGGAATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAGGCCACAGATCCCCACAGTATTGCTGAGCGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAGAGCAGCGATGCTTGATGAAATTGTGGATTATGTGAAATTTCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGATTGGGAGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGGGGGAGGACATAGAAGGTGGAGCCAATCAGCCGCATGCTTGGGACAAGTGGTCCAATGATGGCACAGAACAACAAGTGGCTAAGCTTATGGAAGAAGATGTGGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAACAATTATCAAGCCAGAATCAAACAGCCACTCATAG 1011 0.4985 MAGNTSEGLGDDFFEQILAVPDAQVGYGRTVVNDVGVLQLGSTTSLMPLGLNLEQAAFLRHQDSRNFLHDVVNVDATVTNNLRLHNNNSTSSSSSSTAHITDRDSMHMRGLFPAFGQLHNPTHVHSVRPTLPSPPQPQLHLHHHNQQHFQGQAPAAPVSMAATPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEGEDIEGGANQPHAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTIIKPESNSHS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1523 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Apr8g1523 336 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 323 - -
Apr8g1523 336 Gene3D - 174 236 IPR036638 GO:0046983
Apr8g1523 336 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 323 - -
Apr8g1523 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 238 IPR036638 GO:0046983
Apr8g1523 336 Pfam Helix-loop-helix DNA-binding domain 184 228 IPR011598 GO:0046983
Apr8g1523 336 SMART finulus 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1523 Apr-Chr8 24596296 24601848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1523 149 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.118 4.38e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1523 HLH 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1523 - - vun:114189791 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0819 4 6602527 6607673 Apr8g1523 8 24596296 24601848 ECH
Apr8g1523 8 24596296 24601848 Apr8g1523 8 24596296 24601848 ECH