Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1513 ATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGAACCTCACTACCTCTTCACTTACCCTTCCCTCTCCATGCTTCAGGCACCCCCAATACCACCTTCCCTACAAATTTTGATCCTTATAACCCTCCTCATCAATTGCCACTCCAACCCAACCTCTTGCACCCGTTACACCACCACACTTCTTCTACCCACAAAGATGAAGAGAAGGAAGAAAACACCACCGTGTCAATGAACTTCGAAATCCAAAGAGATCCAAGGCAACAATTGCCCGAGCTGATTGATCCATGGAACAACGATGAAGTGCATGCGCTGTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCCGAGCTCACTTGGGAACATGTCTCAAGGAAACTCGCAGAGCTTGGATACAATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAAAGCAGATATTTCAACAACATTAACTTCGCCAAGAATAACAATTATCGCTTCCTTAGCGAGCTTGAACAGCTTTATCATCAAGGTGAAGGTGGTGATCATCATCAGGGTGGCACCCAAGATAAGACCCATCAGCTGCAAAAACAAGACAAGATGGGCCATCATGCATTAGAACAAGAGGCTCCAAGAAACGTTGAATCAACGCTGGCCAAACAAAGCGAAGAGGTGGTAGTGGATAAGACAAAGGAACGCAAGAGAAAGAGACCCGATAGATTTGAGATGTTCAAGGGTTTTTGCGAGAGCATTGTGCACAAGATGATGGCTCAGCAGGAGGAGATGCACAACAAGCTCCTCCAAGACATGATGAGAAGAGATGAAGAGAAGTTTACAAAAGAGGAAGCTTGGAAGAAGCAAGAGATGGATAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCTGGTGATAGACAAGCCAATATAATTGAAATCTTGAAGAAATTCTCAGCAAGTTCCCCTGCAAGCCAGAGCCTTAAGGTAACCAATGGTTCAAATCCAGTTACTCAAAACCCTAATCCTTCTTCTACTATGATTCTAAATCATCTAAACACTGATACCTCTCCCTCACAAAACAATCCAGCTTTACCCACAACAGAAAACCCTAGCTCAAGTCTTGCACATGACACATTGCAAGTTATATCTTCTTCTAACACTTCAGCTCAAGCTCCCCAGAACCCTAGCTCTTCTTCTCTAAATAGCCAGAACAATAATCCACTAGAGAAAAATTCAGTTTTGAATAGAGCCTCCTCAAACTTTGTATCCACCAATGAGAAAGACGATGTGGGGAGAAGGTGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCAATAGTGTAAACAACAACAACAATGAAGACAAAGAAGGGAACAAGGCTCCACTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGGTACAAGAGAAGTGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACTAAGGATGCTAATAAGAAGAGGTCTCTTGATTCCAGGACTTGTCCCTACTTTCATCAATTGAGCAATCTGTATAATCAAGGGAAACTTGTTCTACAATCTGAAAGGTCCGAAAGCCACTTGACTCCACAGGGGAATTCCGACCAAGTGCCACAAGATCAAACCCAAATAGCTGAGTCTTCTTCTCAAGTGGGGTCTGCAGCTGCTGGTTTCAGTGTGCAGCAGGTTGATCATGGAGCACCGACAGCTAGCTTGATGAATGAGAACAATAGTTCTATTCGGGTGCAAGACATTGACCCTGTGAAGAAAATGAAGGAATAG 1827 0.4395 MFDGVPDQFHQFITPRTSLPLHLPFPLHASGTPNTTFPTNFDPYNPPHQLPLQPNLLHPLHHHTSSTHKDEEKEENTTVSMNFEIQRDPRQQLPELIDPWNNDEVHALLRIRSSMESWFPELTWEHVSRKLAELGYNKRSAEKCKEKFEEESRYFNNINFAKNNNYRFLSELEQLYHQGEGGDHHQGGTQDKTHQLQKQDKMGHHALEQEAPRNVESTLAKQSEEVVVDKTKERKRKRPDRFEMFKGFCESIVHKMMAQQEEMHNKLLQDMMRRDEEKFTKEEAWKKQEMDKMNKELEMMAREQAIAGDRQANIIEILKKFSASSPASQSLKVTNGSNPVTQNPNPSSTMILNHLNTDTSPSQNNPALPTTENPSSSLAHDTLQVISSSNTSAQAPQNPSSSSLNSQNNNPLEKNSVLNRASSNFVSTNEKDDVGRRWPKDEVLALINLRCNSVNNNNNEDKEGNKAPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDANKKRSLDSRTCPYFHQLSNLYNQGKLVLQSERSESHLTPQGNSDQVPQDQTQIAESSSQVGSAAAGFSVQQVDHGAPTASLMNENNSSIRVQDIDPVKKMKE* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1513 608 MobiDBLite consensus disorder prediction 537 572 - -
Apr8g1513 608 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 13 580 - -
Apr8g1513 608 ProSiteProfiles Myb-like domain profile. 437 497 IPR001005 -
Apr8g1513 608 MobiDBLite consensus disorder prediction 54 77 - -
Apr8g1513 608 MobiDBLite consensus disorder prediction 325 429 - -
Apr8g1513 608 CDD GT1 436 504 - -
Apr8g1513 608 MobiDBLite consensus disorder prediction 178 201 - -
Apr8g1513 608 PANTHER - 13 580 - -
Apr8g1513 608 MobiDBLite consensus disorder prediction 325 433 - -
Apr8g1513 608 Pfam Myb/SANT-like DNA-binding domain 436 525 IPR044822 -
Apr8g1513 608 Pfam Myb/SANT-like DNA-binding domain 98 163 IPR044822 -
Apr8g1513 608 ProSiteProfiles Myb-like domain profile. 99 152 IPR001005 -
Apr8g1513 608 MobiDBLite consensus disorder prediction 537 608 - -
Apr8g1513 608 MobiDBLite consensus disorder prediction 63 77 - -
Apr8g1513 608 Gene3D - 100 157 - -
Apr8g1513 608 Gene3D - 438 502 - -
Apr8g1513 608 MobiDBLite consensus disorder prediction 579 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1513 Apr-Chr8 24456787 24459622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1513 1 529 Trihelix Transcription Factor Family AT5G28300 37.977 1.51e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Apr8g1513 Myb_DNA-bind_4 5.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1513 - - ccaj:109795059 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr8g1513 8 24456787 24459622 Apr8g1513 8 24456787 24459622 ECH
Apr4g0805 4 6531385 6534585 Apr8g1513 8 24456787 24459622 PCT