Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1487 ATGGGGTGTGTGATTAGCAGAGAAGTCTCATCAGGAATAATCTCTGAAGTGAAGGAAGAGAAGAATTTGAGTGTTGAGTCCAACAAGAAGGTTGATGAAGTGTCCCCTAGCCGAGTCGAGGGGAACGTGGTAGAGGCTCATAATGGTGAGAGGGAGGAGAAGAAAGAGAAGGGTGGTGTTGATGGGGTTCAGCGGCCGAGGGGTGAAAGAAGAAAATCAAAGCCAAATCCAAGGCTAAGTAATCCACCAAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTTACAGCAGTGTGTGGAGAAGCACTTAGTGGGTGGATTCCACGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATATAAAGCTAAAGATACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTATTATTTTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGGTTAAATGTTACGTGCATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGACATGTACTTCACCGTGATATTAAAGGGTCCAATCTTCTTATTGACAATGAAGGAGTACTTAAAATTGCTGACTTTGGACTTGCATCTTTCTTTGATCCATCCCACAGACATCCCATGACTAATCGTGTAGTTACCCTTTGGTACCGACCTCCTGAGTTGCTTCTTGGTGCAACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTGTTGGCTGGGAAACCTATTATGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAAAGGTCAAAATTGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATACAAGAGATGCATAAGAGAGACATTTATAGATTTTCCACCTTCTGCAATGCCCCTTATTGATACTCTTCTTGCAATTGATCCAGCAGAACGGAAGACTGCCTCAGATGCTCTAAGAAGTGAGTTTTTTACCACCGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCCCCCACCAAGGAAATGGATGCTAAACGACGGGATGATGAAACTAGGAGATTAAGAGCTGCAGGCAAAGCTCATGCTGATGGTGCAAAGAAGCATCGAACACGTGATCGTGCTGTAAAAGCTGTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAGTCCAATATTGATAGAAGGCGTTTAATCACTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATGAAGATGGACAACTTGGGTATCCTTTGGGATCTTCAAATCATATTGATCCAGATATTGTTCCTCCCGATGCCTCTATGGGTTCAACTTCATATACTTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCTAGCATTGGGGTCACAAAGCGCAAGAAACATACTGCAGGTGAAGCATTGGATTTATCAAAACCATATAAAGGTGCCCCCAAGGATAAGGTTAAAGGAAAGAGAATCATATCTTAG 1743 0.4309 MGCVISREVSSGIISEVKEEKNLSVESNKKVDEVSPSRVEGNVVEAHNGEREEKKEKGGVDGVQRPRGERRKSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREIIILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYVHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPSHRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKRSKLPNATLFKPREPYKRCIRETFIDFPPSAMPLIDTLLAIDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPTKEMDAKRRDDETRRLRAAGKAHADGAKKHRTRDRAVKAVPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGYPLGSSNHIDPDIVPPDASMGSTSYTFSKEPFQAWSGPIGNPASIGVTKRKKHTAGEALDLSKPYKGAPKDKVKGKRIIS* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1487 580 MobiDBLite consensus disorder prediction 20 36 - -
Apr8g1487 580 MobiDBLite consensus disorder prediction 550 580 - -
Apr8g1487 580 PANTHER CELL DIVISION PROTEIN KINASE 42 557 - -
Apr8g1487 580 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Apr8g1487 580 MobiDBLite consensus disorder prediction 530 580 - -
Apr8g1487 580 SMART serkin_6 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1487 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Apr8g1487 580 CDD STKc_CDK9_like 118 402 - -
Apr8g1487 580 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1487 580 MobiDBLite consensus disorder prediction 420 434 - -
Apr8g1487 580 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Apr8g1487 580 Gene3D Transferase(Phosphotransferase) domain 1 201 441 - -
Apr8g1487 580 PANTHER OS01G0367700 PROTEIN 42 557 - -
Apr8g1487 580 MobiDBLite consensus disorder prediction 20 90 - -
Apr8g1487 580 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Apr8g1487 580 MobiDBLite consensus disorder prediction 412 434 - -
Apr8g1487 580 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1487 580 MobiDBLite consensus disorder prediction 44 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1487 Apr-Chr8 23802675 23811750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1487 110 440 Core Cell Cycle Gene Families AT5G10270 52.450 9.83e-120 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Apr8g1487 Pkinase 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1487 K08819 - gmx:100817289 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0776 4 6305164 6310837 Apr8g1487 8 23802675 23811750 ECH
Apr8g1487 8 23802675 23811750 Apr8g1487 8 23802675 23811750 ECH
Apr4g0776 4 6305164 6310837 Apr8g1487 8 23802675 23811750 PCT