Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1475 ATGGACAAAGTTTTTCATCTTAATCCCAAAAGATCAACATTTCCGCTTTCTTCATCATCTTCTGCACACGACTTGAGGCATTTGGACTTGGAGAAAGAGAAAGAAGACGAGACATCTCCAAGAGGAGTCTTAGAAGCCTGCATCAAAGACTATGACTCTCTTCACCCACAAGAATCTGATACCACGTGTTCAAGCTCCAGGGCGCGCTCTCACTGGTCCAAATTCCTCAAACTTTGGAAAACGAAATCGGTTAAGCGCCTAACTTCCTTCCATCCTATTTCTGTGCCAAAGATACCGAAGTGGAAAAGCAAAAGCACAAGAGAAAATGCTGTTCTCTCTAATCTATACAACTTCAGGTCTTCTTTGACCACTTTCACTCTCTCTGACCTCAAATATGCAACCAACAATTTTAGCCATGAGAATTTAATTGGAAGAGGTGGATTTGCCGAGGTTTATCAGGGGTGTCTACAACATGGGCAATTAGTAGCTGTGAAGAAAATGACAAACGGGACCACAGATGAAAAGACCGCAGGCTTTCTTTCTGAGTTAGGTGTAATTGCTCATGTTGACCATCCCAATACTGCCAAGCTAATTGGATGTTGTGTAGAGGGAGGAATGCACCTTGTTTTTGAACTCTCTCCACTGGGAAGTTTAGGATCTCTTCTTCATGGTTCAGAGAAAAACAAATTAGATTGGATTAGAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATTTGCATGAGAATTGTCACAGGAGAATCATTCACAGAGATATTAAGGCAGAAAATATTCTGCTCACGGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAGTGGTTACCAGAACAATTGACTCATCATAATGTATCAAAATTTGAAGGCACATTTGGATATTTTGCTCCAGAATATTGCATGCACGGCATAGTAGACGAGAAAACTGATGTTTATTCATTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTCCGGCGTTGAATCATTTGCAGCAGAGTGTTGTGATATGGGCAAAACCTATGCTTGACTCTAATCATATCAAGGACCTTGTTGATCCTTCTCTTGGCAATAATTATGACCAAGAACAGATGAGGCGCTTAGTTTTGACTGCATCACTGTGTGTTGATCAATCTCCTATCTTACGCCCCCGCATGAGACAGGTTGTGACAATGCTAAGAGGTGATGAGTGTATCAACGAGTGTAGAAAAGAAGGCCCAAGGAGGCGTCCCCGAAGAACATACTCAGAAGAGCTACTTGATGTGCAAGAATACAACTCCACCAAATATCTAAGAGATCTCAAACGACATAAGCAGGTTGCCTTGGGTCTTGATAGCTAA 1371 0.4187 MDKVFHLNPKRSTFPLSSSSSAHDLRHLDLEKEKEDETSPRGVLEACIKDYDSLHPQESDTTCSSSRARSHWSKFLKLWKTKSVKRLTSFHPISVPKIPKWKSKSTRENAVLSNLYNFRSSLTTFTLSDLKYATNNFSHENLIGRGGFAEVYQGCLQHGQLVAVKKMTNGTTDEKTAGFLSELGVIAHVDHPNTAKLIGCCVEGGMHLVFELSPLGSLGSLLHGSEKNKLDWIRRYKIALGIADGLLYLHENCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQLTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRPALNHLQQSVVIWAKPMLDSNHIKDLVDPSLGNNYDQEQMRRLVLTASLCVDQSPILRPRMRQVVTMLRGDECINECRKEGPRRRPRRTYSEELLDVQEYNSTKYLRDLKRHKQVALGLDS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1475 456 Gene3D Transferase(Phosphotransferase) domain 1 214 431 - -
Apr8g1475 456 SUPERFAMILY Protein kinase-like (PK-like) 116 403 IPR011009 -
Apr8g1475 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Apr8g1475 456 Pfam Protein tyrosine and serine/threonine kinase 140 402 IPR001245 GO:0004672|GO:0006468
Apr8g1475 456 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Apr8g1475 456 PANTHER OS08G0249100 PROTEIN 17 449 - -
Apr8g1475 456 Gene3D Phosphorylase Kinase; domain 1 98 211 - -
Apr8g1475 456 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 17 449 - -
Apr8g1475 456 SMART serkin_6 137 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr8g1475 456 ProSiteProfiles Protein kinase domain profile. 137 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1475 Apr-Chr8 23639163 23641701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1475 122 409 Receptor kinase-like Gene Family AT1G53420 43.098 9.91e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr8g1475 PK_Tyr_Ser-Thr 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1475 - - cam:101512181 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0757 4 6173486 6176626 Apr8g1475 8 23639163 23641701 ECH
Apr8g0191 8 1542698 1546185 Apr8g1475 8 23639163 23641701 ECH
Apr4g1111 4 9396713 9399875 Apr8g1475 8 23639163 23641701 ECH
Apr1g1693 1 26611910 26615660 Apr8g1475 8 23639163 23641701 ECH
Apr8g1475 8 23639163 23641701 Apr8g1475 8 23639163 23641701 ECH
Apr4g0757 4 6173486 6176626 Apr8g1475 8 23639163 23641701 PCT