Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1464 ATGTGTTTACCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCATTAGAAGCAGTGGTGTTCCCACAAACACAAGGTTACACTTCAATCAAGGATTTCTACAACTGCAACTTCTTGTCTGCTTCACCTTCTCCCAACTGGGGTGCCTATGATCACCTCAACCTTGACAAAGAAGAAGAAGAACAAGACTCTATCACTAACTTTCTCGATAGCCAAACAGAGAATTACCCTTATGGGGATTGGACCAGTTCCTCCACTTCTTCAATGTTACCCCACTTGAATGAAACCACTGACCTCAGTAACAACCAAAACATTGATACCCCAACTCGTCCCAAGAGGCGCAGACCCAAAAGCAGAAAGAACAAGGAGGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGAAATAGGAGAAAGCAGATGAATGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCAGATTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTGAAGGAGCTTGAGCAGAGGTTGCAGTTTCTTGGAGCTCAGAAAGAAGCAGAAGTGAAATCTGATGGTGGTGATGGTGCAAACAATAACATGCCCTTTTCTGAGTTCTTCACTTTTCCTCAGTATTCAACGAGTGGTGGTGGCTGTGATAGTTCTGCAGCCATAGCTGAGCACGTGGGTGAAGTTCAGTCTTGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGAGGCCAAAGCAGCTCTTGAAGCTGGTGTCTGGTTTGCATACCATGCGTCTCACAATCTTGCACCTAAATGTTACCACCACCGGTGAAATTGTCCTATACTCTCTCAGTGTTAAGGTAGAGGATGATTGCAAGTTGGGATCAGTGGATGATATATCTGCAGCTGTATACCAGATGCTGGATAGGATTCAACAAGAGGGAATGTTGAATTAA 990 0.4414 MCLPEGERDRERAMALEAVVFPQTQGYTSIKDFYNCNFLSASPSPNWGAYDHLNLDKEEEEQDSITNFLDSQTENYPYGDWTSSSTSSMLPHLNETTDLSNNQNIDTPTRPKRRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLQFLGAQKEAEVKSDGGDGANNNMPFSEFFTFPQYSTSGGGCDSSAAIAEHVGEVQSCIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDISAAVYQMLDRIQQEGMLN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1464 329 MobiDBLite consensus disorder prediction 76 107 - -
Apr8g1464 329 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Apr8g1464 329 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 329 - -
Apr8g1464 329 SMART finulus 133 184 IPR011598 GO:0046983
Apr8g1464 329 PANTHER MAX DIMERIZATION, MAD 14 329 - -
Apr8g1464 329 CDD bHLH_AtFAMA_like 130 198 - -
Apr8g1464 329 Gene3D - 116 194 IPR036638 GO:0046983
Apr8g1464 329 MobiDBLite consensus disorder prediction 76 126 - -
Apr8g1464 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Apr8g1464 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 190 IPR036638 GO:0046983
Apr8g1464 329 Coils Coil 175 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1464 Apr-Chr8 23482587 23483830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1464 14 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.276 2.36e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr8g1464 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1464 - - pvu:PHAVU_007G181900g 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0744 4 6065215 6066644 Apr8g1464 8 23482587 23483830 PCT