Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1462 ATGGACAAACATGGTGGAATTGCCCCTGTTCTCTTCCTCTTCCTCTTCATTTTTCCCCTCGCTGCAGCACAGCCCAGAAACAATGACCAAAACGATTCCTATTACAACCGATTCAGTCCCTCCATGGCCATTATAATAGTCATCCTCATCGCTGCGCTCTTTCTCATGGGTTTCTTCTCTATCTACATCCGCCACTGCGCCGACTCTCCCTCCAGCAGTATCCGCAACCTCGCCGGCGTCGCGGGACGTTCCCGGCGGGCGGCCAGAGGTCTGGACCCGGCGGTGATCGAGACGTTCCCCACCCTTGAATATTCGGTGGTAAAGATTCACAAGATTGGAAAAGGAACACTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGAGACCGAAACGCTGCGTTTGATCCCCAAGTGTGACCACGTATTCCACCCTGAGTGCATCGACGAGTGGCTATCTTCCCACACCACTTGCCCTGTTTGCCGAGCCAACCTCGTTCCGCAACCCGGTGACTCGGCGCGTGGAATCCCGGCCCTCGAGGCCCATGATCACAACCCGCAAGACATCGAGGCCCAAAACGACGCTGTCGAGCCCGCCCCTGAAGATGCGGGCCCAACTACTTCAGTCTCGAATGAACCTGATGTGTTGTGCTTGAACCAGACGCTGAACCGGAACCGAACGAGAGGGTCGCGGTCAGGTCGGGCACGAAGGTTCCCGCGGTCTCACTCGACCGGGCACTCTTTGGTCCAACCGGGCGAAGACACTGAGCGGTTCACTTTGAGGTTGCCCCAGGAAGTGAGGAAGCAGATACTGGACCCGCAGTTGCATCGTGCTAGAAGCCTTGTCATATTGCCTAGAGAAGGTAGTTCGCGGCGGGGATATCGAAACGCCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGAGGCGGTTGGACCGCGGTTTTAAATCGGACCGGTGGGTTTTCACCATGGCGCCGCCGTTCCTAGTGAGAGCCTCGTCGATTAGGTCTCCGAGGGTGGCTAACAACGCCTCTGAAGGAACCTCTGCTTCTGTAGCTACCCTGCCGGCCGCGGCGGCTGCGGAATCGGCGCGCCCTCCGGTTTAG 1101 0.5804 MDKHGGIAPVLFLFLFIFPLAAAQPRNNDQNDSYYNRFSPSMAIIIVILIAALFLMGFFSIYIRHCADSPSSSIRNLAGVAGRSRRAARGLDPAVIETFPTLEYSVVKIHKIGKGTLECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPQPGDSARGIPALEAHDHNPQDIEAQNDAVEPAPEDAGPTTSVSNEPDVLCLNQTLNRNRTRGSRSGRARRFPRSHSTGHSLVQPGEDTERFTLRLPQEVRKQILDPQLHRARSLVILPREGSSRRGYRNAGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNASEGTSASVATLPAAAAAESARPPV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1462 366 MobiDBLite consensus disorder prediction 333 366 - -
Apr8g1462 366 Pfam Ring finger domain 118 161 IPR001841 -
Apr8g1462 366 MobiDBLite consensus disorder prediction 288 308 - -
Apr8g1462 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 307 - -
Apr8g1462 366 SMART ring_2 119 160 IPR001841 -
Apr8g1462 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 166 IPR013083 -
Apr8g1462 366 SUPERFAMILY RING/U-box 113 169 - -
Apr8g1462 366 PANTHER RING FINGER DOMAIN-CONTAINING 9 307 - -
Apr8g1462 366 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Apr8g1462 366 CDD RING-H2_EL5_like 118 161 - -
Apr8g1462 366 MobiDBLite consensus disorder prediction 334 350 - -
Apr8g1462 366 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1462 Apr-Chr8 23431366 23433618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1462 6 363 Rapid Response to Elicitors AT3G05200 46.429 1.09e-97 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1462 K10664 - gmx:100810865 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0743 4 6046992 6048603 Apr8g1462 8 23431366 23433618 PCT