Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1456 ATGGATCATCAAGGGAATGGACAGAACCCATCTATGGGAGTAGTTGGTAGCGCACAACAATTGACTTATGGTTCTAATCCATACCAGGGCAGCCATATAACAGGATCACCTGGTATGGTTGTTGCATCACCTGGAACCATTCAATCCACTGGTCAACCAGGTGGAACTCAGCTAGGACAACATCAACTTGCTTATCAGCATATGCATCAGCAACAACAGCAGCAACTTCAGCAAAGGCTCCAATCCTTTTGGGCAAATCAGTATCAAGAAGTTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGAATCAAGAAGATTATGAAGGCTGATGAGGATGTAAGAATGATATCAGCTGAGGCACCAGTTATATTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCTTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAATGATATTGCAGCAGCCATCACAAGAACTGATATATTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTTGAAAGATGAAGGGCTTGCATCAATGCCAAGAGGAACTGTGCCTGTTACAGGGCCTGCTGAGGCACTTCCTTATTGCTATATGCCACCTCAACATACACAAATTGGAACAACTGGTGTGCCTGTGATGGTGGACCCATATGCTCAACAGTCTCATCTCTACAACATGGCTCCACAGATGTGGCCACAACCACCAGAGCAACAACAATCATCTCCAGATCATTAG 768 0.4427 MDHQGNGQNPSMGVVGSAQQLTYGSNPYQGSHITGSPGMVVASPGTIQSTGQPGGTQLGQHQLAYQHMHQQQQQQLQQRLQSFWANQYQEVEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEGLASMPRGTVPVTGPAEALPYCYMPPQHTQIGTTGVPVMVDPYAQQSHLYNMAPQMWPQPPEQQQSSPDH* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1456 255 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 255 - -
Apr8g1456 255 Pfam Core histone H2A/H2B/H3/H4 62 164 IPR007125 GO:0003677
Apr8g1456 255 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 255 - -
Apr8g1456 255 SUPERFAMILY Histone-fold 66 173 IPR009072 GO:0046982
Apr8g1456 255 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1456 Apr-Chr8 23356322 23357142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1456 1 227 CCAAT-HAP5 Transcription Factor Family AT1G08970 61.404 2.16e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr8g1456 CBFD_NFYB_HMF 5.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1456 K08066 - gmx:100785287 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0738 4 6014789 6017523 Apr8g1456 8 23356322 23357142 PCT