Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1436 ATGGCACCTACTAGGAAATCTAGAAGTGTGAATAAGCGGATTTCAAGTTCAAATGATATTTCTCCTGAGAAAGATGGTGTTAATTCAGGTGTTAATTCAAGTAAAAGCAAACAACGGAAGAAAAAGTTGACTGATAAATTGGGATCTCAATGGAGCAAGGAGGAATTAGAGCGATTTTATGAAGCATATAGGAAGTACGGGAAAGACTGGAAGAAGGTGGCTGCTGTTGTACGTAATAGATCCACTGAAATGGTAGAAGCTCTTTACAGCATGAATCGGGCATACCTGTCTCTGCCAGAGGGTACAGCTTCCGTTGTTGGCCTCATAGCAATGATGACTGATCACTACAATGTGCTGGAAGGAACTGATAGTGAAAGGGAGAGCAATGATGCCTCAGGATCTCGAAAACCTGTGAAAAGAAAGCGTGAAAAGGTTCGGTTTTGTGTCTCTAAAGATCCTGTTCAGTCTCAGTCTATTCCTTCCAGTGATGGATGCCTCTCTCTATTGAAGAGGAGACGCGTTGATGCTTTGGCGTTAACTGAGGCTGCACAAAGAGGGGGCTCTCCCCAGGTTTCTCAAACACCATATAGAAGAATAGAGCAAAAGTCCTCCTCTCCCATCCGGAGTTGGGAAAGAAAGCATCAAATGTCAAAGACAGCTCGTGTCAAGGTTCGTGATGTTTCTGCAGATGAAGAGTTCTTGGAAGGCAGTATAGAAAGCCAGGGAGCTGAAAATGGGGAATATGCAAGAGATAATAGTTCCTTGTTGGATATGGAAGGCATAGGCACTGTTAAAGTTCTTCAGAAGGGGGGGAAATTTTACAGAAAGAAAGAGAGAGTGGAAAATGTTGGAAATCATCAGCTTGATGATGGTGGAGAAGCATGTAGCGGCACTGAAGAAGGATTTAGTTTTAGTTCATTGAAGGAAAAGGATTATATTGAGGTTACTAATGAAAAACTTGAAAAGTTTTCTAAAAGAAATCAGAGGAATAGAAACAAGAAACTTTTCTTTGGAGATGAAACACTTGCCTTGAATGCTTTGCAAACTTTGGCAGATCTATCTCTAATGATGCCAACATCTACAATAGAATCTGAATCGTCCATCCAGTTGAAGCGAGAAAGAATGACTACTGATAAAGATGATAAGTTTGCTTTACCTGAAGCAACATCAACAAGCCATAAGAGACATAAACTTAAACACACTGTGGTCCCTGAAATTGAGCTTTCAACCTTCAAAAAATCTAAGCTAGGAAAGGAATTGGCAAAGGATACTAATGCTCTCTCTGAATCAAAAGAGCAGCTTCCTTTTGCTGATGCAACATGGAAAAGAAAGCGAAAGTCTATGGTTTCAAAGGTTGCAAATGCAAAGCTCAATTCTTATCCAAGTGGTCCCTTGAAAAATGAGGCTGTAGATGATGAGAACAAACCAATAATTAAAGGAAAACACATTGATCAGGTTTTTACCCTACCAAAGCAATTGAAGATAGTCAGATCATCAGAGAGTTCCTTGTGTAGTGATCAGCAAAATTTGACAGTATCAACTGCTGAAGTTCCACTTATAAGTGGAGTTAGTTTACCAACTAAAAGAAGTAGACGCAAGATGATTTTACAGAGAGCATTCATGCCTAAAGAGACATCTTCTGACAACATATTGAAAAGTCAACCTGATAAGTACTCTACCCTCAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTGTATGGTTGGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTCGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCCCGCAGGTTTTCTGAACACTTTCTACGTGAAGAAAGACTAAAACTTGAGCAGTATCGGGAATCAGTGAGGAAACATTACACTGAACTGCAAACTGGTATCAGGGATGGACTTCCAACAGATTTGGCTAGACCATTATATGTTGGACAACGAGTAATTGCTCTTCACCCCAAAACAAGAGAGATTCACGATGGTAGTGTGCTTACTGTTGACTATGACAAGTGCAGGATTCAGTTTGACTGTCCTGAATTAGGTGTTGAATTTGTAATGGACATTGATTGCATGCCGTTGAATCCACTAGATAATATGCCAGAAGCTCTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTCTATTGACTAAAGAGCCACAGATTAATGGAAAATCGTGTTTTGGAGGGTGCGAAACATGTACTTCACCAGTGAAGGTACACACCTCTTCAAGTGCTTTAGTAAAGCAAGGAAAGGCAAAGGTTGCTGCCATTGATAACCTCTGTGCACAGGCAGGATACACCCAACTGTGTAAAGTGACGCACCATCAAGCTAAGGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTGGATAAAAAGGATACGTTGTTAATGGAGCTTCAAAAAGCACACAGTGACATATTGGAAAACCAAAATGGCATACAATGCTTCAAAGATTCTGAGTCTTTCAAGAAGTATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACTATGCTTCAACTGAGGCAACGCAATACTTGCACAGGAAACTCTCTGCCGCCATGGATGAACCCCCAAGCAAGTTTCAATGTTCACGGTGACCTTTCCAGTATGTTGGATAGTTCCGTAATGCTAGAGTCAGGGTCAACTGTTGTAGAGATTATTAAAGGATCCAGGTTAAGAGCAAATGCAATGGTGGATGCTGCATTTCAGGCTTTGTCTTTGACAAAGGAAGATGAAGATGCTTTCATGAAGATTGGACAGGCATTGGATTCTATGAATCATCAGCAGTTGGCCTCCAAGTCTCAGCTACCCATGATCAGGTCCCAAGAGCAAGTGAATGGCGGGTTTTATCATCATAATCATTCAACATCCTGTATAACAGAGCATTTACTTAATGATGTGTGTGGTCCAAAGCTACAAAATGCTTCTGACAAAGTTGATGCTGAAATTCCATCAGAGCTCATCACTTCATGTGTTGCTACATTAATCATGATACAGACTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCAGCCGTTACCAGCCTGCAGCCGTGTTGTCCTCGAAACCTTCGTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTGCTTGA 3282 0.4098 MAPTRKSRSVNKRISSSNDISPEKDGVNSGVNSSKSKQRKKKLTDKLGSQWSKEELERFYEAYRKYGKDWKKVAAVVRNRSTEMVEALYSMNRAYLSLPEGTASVVGLIAMMTDHYNVLEGTDSERESNDASGSRKPVKRKREKVRFCVSKDPVQSQSIPSSDGCLSLLKRRRVDALALTEAAQRGGSPQVSQTPYRRIEQKSSSPIRSWERKHQMSKTARVKVRDVSADEEFLEGSIESQGAENGEYARDNSSLLDMEGIGTVKVLQKGGKFYRKKERVENVGNHQLDDGGEACSGTEEGFSFSSLKEKDYIEVTNEKLEKFSKRNQRNRNKKLFFGDETLALNALQTLADLSLMMPTSTIESESSIQLKRERMTTDKDDKFALPEATSTSHKRHKLKHTVVPEIELSTFKKSKLGKELAKDTNALSESKEQLPFADATWKRKRKSMVSKVANAKLNSYPSGPLKNEAVDDENKPIIKGKHIDQVFTLPKQLKIVRSSESSLCSDQQNLTVSTAEVPLISGVSLPTKRSRRKMILQRAFMPKETSSDNILKSQPDKYSTLKEKLSSCLSSCMVGRWFIFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERLKLEQYRESVRKHYTELQTGIRDGLPTDLARPLYVGQRVIALHPKTREIHDGSVLTVDYDKCRIQFDCPELGVEFVMDIDCMPLNPLDNMPEALRRQIGARKASLLTKEPQINGKSCFGGCETCTSPVKVHTSSSALVKQGKAKVAAIDNLCAQAGYTQLCKVTHHQAKEADIHALSELKRALDKKDTLLMELQKAHSDILENQNGIQCFKDSESFKKYYATVLVELKEASGQVSDTMLQLRQRNTCTGNSLPPWMNPQASFNVHGDLSSMLDSSVMLESGSTVVEIIKGSRLRANAMVDAAFQALSLTKEDEDAFMKIGQALDSMNHQQLASKSQLPMIRSQEQVNGGFYHHNHSTSCITEHLLNDVCGPKLQNASDKVDAEIPSELITSCVATLIMIQTCTERQYPPADVAQILDSAVTSLQPCCPRNLRIYREIQMCMGRIKTQILALIPA* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1436 1093 SMART sant 47 95 IPR001005 -
Apr8g1436 1093 MobiDBLite consensus disorder prediction 1 47 - -
Apr8g1436 1093 PANTHER LIN-9 1 175 IPR010561 GO:0006351|GO:0017053
Apr8g1436 1093 PANTHER LIN-9 174 1092 IPR010561 GO:0006351|GO:0017053
Apr8g1436 1093 MobiDBLite consensus disorder prediction 120 139 - -
Apr8g1436 1093 MobiDBLite consensus disorder prediction 185 203 - -
Apr8g1436 1093 SMART DIRP_2 583 684 IPR033471 -
Apr8g1436 1093 ProSiteProfiles Myb-like domain profile. 49 89 IPR001005 -
Apr8g1436 1093 Gene3D - 3 103 - -
Apr8g1436 1093 MobiDBLite consensus disorder prediction 183 214 - -
Apr8g1436 1093 Coils Coil 815 835 - -
Apr8g1436 1093 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 175 IPR028306 -
Apr8g1436 1093 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 174 1092 IPR028306 -
Apr8g1436 1093 MobiDBLite consensus disorder prediction 120 137 - -
Apr8g1436 1093 SUPERFAMILY Homeodomain-like 45 93 IPR009057 -
Apr8g1436 1093 Pfam DIRP 582 683 IPR033471 -
Apr8g1436 1093 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 85 IPR017930 -
Apr8g1436 1093 Pfam Myb-like DNA-binding domain 49 85 IPR001005 -
Apr8g1436 1093 Coils Coil 313 333 - -
Apr8g1436 1093 CDD SANT 51 85 IPR001005 -
Apr8g1436 1093 ProSiteProfiles SANT domain profile. 46 83 IPR017884 -
Apr8g1436 1093 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1436 Apr-Chr8 23035325 23047930 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr8g1436 DIRP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1436 - - gmx:100816217 1674.83