Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr8g1435 ATGTTTGGTTCGATAGTGGGGCCGGGTAGAGGGCATGGAAGTGGTGGAGTTGCAGGACCAATTTTGATTCCCAGGCGTTTCGTTTGGCCTCATGGAGGAAGAAGGGTGTTTCTATGTGGTTCTTTTACGAGGTGGTCAGCATTTATACCTATGTCTCCTGTGGAGGGATGCCCGACTGTATTTCAAGTTATTTGCAGCATAATGCCAGGATATCATCAGTACAAATTTAATGTGGATGGTGAGTGGCGGCATGATGCACAGCAGCCATTTGTAAGTGTAGACTATGGGATAGTGAATACTATTTATTTAGTGAGAGAACCAGATATTTTGCCTCCTATCATAAGTACTGAAACACCTGGTAGATCCCACATGGAGGTTGACAATGATGTCTTTGGGCATGTGGAACGAAATCCGAGGATTTCAGAGTCTGATCTGCAGGTCTCTCGACACCATATATCTGTATTCTTGTCTTCACATACTGCTTACGAGTTGCTTCCTGAGTCTGGCAAGGTTATTGCCTTGGATATAACTTTACCAGTTAAACAAGCATTCCATGTTCTTTATGATGAGGGAATATCTATGGCTCCTCTATGGGATTGTAGCAAGTGTCAGTTTGTTGGAATGCTTAGTGCAATGGACTTCATTCTGATACTAAAAGAGCTGGGGAATCAGGGATCAAACTTGACTGAAGAACAACTTGAGACGCATACTATAGGAGAATGGAAAAAGGCAAAAGTACAGCAAAGTGGAACTGATAGTAATGGGAGCACATATCCTCGGCATTTTGTTCATGCTGGGCCCCATGAGTATCTAAAAGATGTTGCTTTAAAAATTTTGCAAAACAAGGTGGCAACAGTTCCTATTATACATTCTTCTTCAGAGGACGGTTCATTTCCTCAGCTGCTACACCTTGCTTCCCTCTCAGGAATACTAAAATGTATACGCAGGCATTTTAAGCATTCTTCTGGTTCCTTGCCCATTCTTCAGCTACCGATTGGTTCAATACCTTTAGGTACATGGATGCCAAAAATGGGGGAAACCAATAAACAGGCATTTGCAATGCTAAGGCCAAATGGTTCTCTTGGTGATGCTCTGTCCCTTTTGATTCGAGCTGAAGTTAGCTCAATACCAATTGTGGATAATAATGATTCGTTACTTGATATATATTCAAGAAGTGATATTACTGCATTAGTAAAAGATAAAGCGTATGCTAGGATAAGTTTGGATGGAGTTAGTCTCCATCAGGCATTGCTTTTGGGACGAGATGCAAATTCTCCTTATGGGCTTCCCAATAGCCAGAGATGTCATATGTGTTTGAGGTCTGATTCATTGCACAAAGTGATGAAGCGGTTGGCTAATCCTGGTGTTAGACGACTTGTGGTTGTGGATGCTGGCAGCAGGCGCGTGGAAGGTATCATTACCTTAGGTGACGTGTTCAGATTCTTGTTAGGCTAG 1455 0.4247 MFGSIVGPGRGHGSGGVAGPILIPRRFVWPHGGRRVFLCGSFTRWSAFIPMSPVEGCPTVFQVICSIMPGYHQYKFNVDGEWRHDAQQPFVSVDYGIVNTIYLVREPDILPPIISTETPGRSHMEVDNDVFGHVERNPRISESDLQVSRHHISVFLSSHTAYELLPESGKVIALDITLPVKQAFHVLYDEGISMAPLWDCSKCQFVGMLSAMDFILILKELGNQGSNLTEEQLETHTIGEWKKAKVQQSGTDSNGSTYPRHFVHAGPHEYLKDVALKILQNKVATVPIIHSSSEDGSFPQLLHLASLSGILKCIRRHFKHSSGSLPILQLPIGSIPLGTWMPKMGETNKQAFAMLRPNGSLGDALSLLIRAEVSSIPIVDNNDSLLDIYSRSDITALVKDKAYARISLDGVSLHQALLLGRDANSPYGLPNSQRCHMCLRSDSLHKVMKRLANPGVRRLVVVDAGSRRVEGIITLGDVFRFLLG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr8g1435 484 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Apr8g1435 484 Gene3D Immunoglobulins 21 105 IPR013783 -
Apr8g1435 484 SMART cbs_1 351 399 IPR000644 -
Apr8g1435 484 SMART cbs_1 170 219 IPR000644 -
Apr8g1435 484 SMART cbs_1 434 483 IPR000644 -
Apr8g1435 484 Gene3D - 336 484 IPR046342 -
Apr8g1435 484 ProSiteProfiles CBS domain profile. 347 405 IPR000644 -
Apr8g1435 484 Gene3D - 134 324 IPR046342 -
Apr8g1435 484 SUPERFAMILY E set domains 23 105 IPR014756 -
Apr8g1435 484 Pfam CBS domain 353 398 IPR000644 -
Apr8g1435 484 Pfam CBS domain 434 483 IPR000644 -
Apr8g1435 484 SUPERFAMILY CBS-domain pair 352 483 IPR046342 -
Apr8g1435 484 ProSiteProfiles CBS domain profile. 430 484 IPR000644 -
Apr8g1435 484 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 484 - -
Apr8g1435 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 484 - -
Apr8g1435 484 CDD E_set_AMPKbeta_like_N 24 104 - -
Apr8g1435 484 Pfam Glycogen recognition site of AMP-activated protein kinase 23 108 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr8g1435 Apr-Chr8 23019997 23030180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr8g1435 27 136 Protein tyrosine phosphatase (PTP) family AT3G01510 29.464 4.38e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr8g1435 - - gmx:100790062 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0718 4 5886955 5896175 Apr8g1435 8 23019997 23030180 PCT